Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,972,356 – 2,972,476 |
Length | 120 |
Max. P | 0.847134 |
Location | 2,972,356 – 2,972,476 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.39 |
Mean single sequence MFE | -43.87 |
Consensus MFE | -27.71 |
Energy contribution | -27.47 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.52 |
Mean z-score | -2.13 |
Structure conservation index | 0.63 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.847134 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2972356 120 + 27905053 CUUUAGCGACAUGGGCGUACGUUUGUAGUCGAAGAAAAUGGGCGCCAUGCUGUGGGCGGAUAUGGGGGCAUAGUAGAAUCCCAUGUUAAAGCAUAGCCGCUGAUUGAUUACUGCUCUCAC ..((((((.....((((..(((((...........)))))..))))..((((((....(((((((((...........)))))))))....))))))))))))................. ( -37.60) >DroVir_CAF1 11141 120 + 1 CUUCAGAGACAUGGGCGUGCGCUCGUAGUCGAAGAAUAUGGGGGCCAUGCUAUGCGCCGAGAUUGGGGCAUAGUAGAAGCUCAUGUUGAAGCACAAACGUUGAUUGACCAGCGCCCGUUC (((((...(((((((((.((.((((((.((...)).)))))).))).((((((((.(((....))).))))))))...)))))))))))))......(((((......)))))....... ( -44.60) >DroGri_CAF1 14873 120 + 1 CUUCAGGGACAUCGGCGUGCGCUCGUACGCAAAGAAGAUGGGCGCCAUACUGUGUGCCGAGAUGGGGGCAUAGUAGAAGUUCAUGUUAAAGCACAAACGUUGAUUGACCAAUGCCCUCUC .(((.((.(((.(((..(((((((((.(........)))))))).))..)))))).)))))..((((((((.((...((((.(((((........))))).)))).))..)))))))).. ( -39.90) >DroWil_CAF1 15699 120 + 1 CUUCAGAGACAUGGGUGUUCGCUCGUAGUCAAAGAAAAUGGGUGCCAUGCUAUGGCCUGAAAUGGGAUUGUAAUAGAAACCCAUAUUAAAACACAGUCGCUGAUUGAUCAGGGCUCGUAG .(((((.(((((((((....)))))).))).............(((((...))))))))))(((((.((........)))))))........((((((.((((....)))))))).)).. ( -31.80) >DroMoj_CAF1 11981 120 + 1 CUUCAGGGUCAUGGGCGUGCGCUCGUAGUCGAAGAAUAUGGGCGCCAUGCUAUGCGCCGAAAUGGGCGCAUAGUAAAAGUUCAUAUUGAAGCAUAGGCGCUGAUUGACCAGCGCUCGUUC ((((((....(((((((.(((((((((.((...)).)))))))))).(((((((((((......)))))))))))...)))))).)))))).(..(((((((......)))))))..).. ( -54.30) >DroAna_CAF1 12007 120 + 1 CUUCAGCGACAUGGGCGUACGCUCGUAGUCGAAGAAGAUGGGCGCCAUGCUAUGGGCCGAGAUGGGUGCAUAGUAGAAGCCCAUGUUAAAGCACAGCCGCUGGUUAAUCAGGGCUCGCUG ((((..((((((((((....)))))).))))..))))((((((....(((((((.(((......))).)))))))...)))))).....(((..((((.((((....)))))))).))). ( -55.00) >consensus CUUCAGAGACAUGGGCGUGCGCUCGUAGUCGAAGAAAAUGGGCGCCAUGCUAUGGGCCGAGAUGGGGGCAUAGUAGAAGCCCAUGUUAAAGCACAGACGCUGAUUGACCAGCGCUCGCUC .......(((((((((...(((((((..((...))..)))))))...((((((((.((......)).))))))))...)))))))))..........(((((......)))))....... (-27.71 = -27.47 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:25 2006