Locus 8767

Sequence ID 3R_DroMel_CAF1
Location 23,404,077 – 23,404,168
Length 91
Max. P 0.579422
window14085

overview

Window 5

Location 23,404,077 – 23,404,168
Length 91
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 73.51
Mean single sequence MFE -24.48
Consensus MFE -8.45
Energy contribution -9.98
Covariance contribution 1.53
Combinations/Pair 1.35
Mean z-score -2.06
Structure conservation index 0.35
SVM decision value 0.09
SVM RNA-class probability 0.579422
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23404077 91 + 27905053
GAAAUUCGCGUAGAAAGAGUCAACUUAUGGCCA---GGCCAAAAGGCAAAUUGCCUCUGAGCACGCUCUUUAACUUUGUUGGCCAGGCUGUAAA------
((..(((.....)))....))...((((((((.---((((((.((((.....))))..(((....)))..........)))))).)))))))).------ ( -28.40)
>DroSec_CAF1 18579 91 + 1
AAAAUCCACGUAGAAAGAGUCAACUUAUGGCCA---GGCCAAAAGGCAAAUUGCCUCUGAGCACGCUCUUUAACUUUGUUGGCCAGGCUAAAAG------
.......................(((.(((((.---((((((.((((.....))))..(((....)))..........)))))).))))).)))------ ( -26.80)
>DroSim_CAF1 18799 91 + 1
AAAAUCCGCGUAGAAAGAGUCAACUUAUGGCCA---GGCCAAAAGGCAAAUUGCCUCUGAGCACGCUCUUUAACUUUGUUGGCCAGGCUAAAAA------
................(((....))).(((((.---((((((.((((.....))))..(((....)))..........)))))).)))))....------ ( -25.80)
>DroEre_CAF1 21873 89 + 1
AAAAUCCGCGGAGAAAGAGUCAACUG--GGCCA---GGCGAAAAGGCAAAUUGGCCGUGAGCACGCUCUUUAACCGCGCCGGCCAGGCAGAAAA------
.......((((..(((((((......--(((((---.((......))....)))))((....)))))))))..))))(((.....)))......------ ( -31.80)
>DroWil_CAF1 18259 99 + 1
AAAAUCAGCCAAGA-AGAGACCACAGAGAGAGAAAGAGAGAACUGUCAAAUUGACUUUUAGCACGCUCUUUAACUACUGCAACCAGCCACAACCUCAACC
..............-.(((.......((((((...(.(..((..(((.....)))..))..).).)))))).....(((....))).......))).... ( -12.70)
>DroYak_CAF1 19842 75 + 1
AAAAUCCGCGGAGAAAGAGUCA-------------------AAAGGUAAAUUGGCUCUGAGCACGCUCUUUAACUUCGCCGGCCAGGCAGAAAA------
.....((((((((..(((((((-------------------(........))))))))(((....))).....))))).)))............------ ( -21.40)
>consensus
AAAAUCCGCGUAGAAAGAGUCAACUUAUGGCCA___GGCCAAAAGGCAAAUUGCCUCUGAGCACGCUCUUUAACUUCGUCGGCCAGGCAGAAAA______
.............(((((((...((((.((.((....((......))....)).)).))))...)))))))......(((.....)))............ ( -8.45 =  -9.98 +   1.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:18 2006