Locus 8764

Sequence ID 3R_DroMel_CAF1
Location 23,397,072 – 23,397,182
Length 110
Max. P 0.500000
window14078

overview

Window 8

Location 23,397,072 – 23,397,182
Length 110
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 79.27
Mean single sequence MFE -24.26
Consensus MFE -5.76
Energy contribution -7.20
Covariance contribution 1.44
Combinations/Pair 1.23
Mean z-score -1.87
Structure conservation index 0.24
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23397072 110 - 27905053
UAGCUCAGAUUAAGAUAGUUAGACUCAGGACUAAACUAUUGCGUGCGAAACGAUUUUUGAGUUGUGAUGCACAAAAGUUUAUAAGCUACUUAGGCAUAGAGUAAUCAAAU
..((((.......(((((((((........)).)))))))(((((((..((((((....))))))..)))))...((((....))))......))...))))........ ( -23.10)
>DroSec_CAF1 11665 110 - 1
UAGCUCAGAUUAAGAUAGUUAGACUCGGGAGCAAACUAUUGCGUGCGAAACGAUUUGUGAUUUGUGAUUCACAAAAGUUUAUAAGAUACUUAGGCAUGGAGUAAUCAAAU
..((((.......(((((((.(.((....))).))))))).(((((.((((..(((((((........))))))).)))).((((...)))).)))))))))........ ( -25.20)
>DroSim_CAF1 11696 110 - 1
UAGCUCAGAUUAAGAUAGUUAGACUCAGGAGCAAACUAUUGCGUGCGAAACGACUUGUGAUUUGUGAAUCACAAAAGUUUAUAAGAUACUUAGGCAUGGAGUAAUCAAAU
..((((.......(((((((.(.((....))).))))))).(((((.((((...((((((((....))))))))..)))).((((...)))).)))))))))........ ( -25.60)
>DroEre_CAF1 14758 90 - 1
UGCCUUAGGUUAAGAUAGUUCGACUCAG---UAAACUAUUGCGUGCGGAACGAUUUGAAAUUUGUGAUUCUUAAAAGUUUAUAGGA-----------------AUCAAAU
.....((((((.((((..((((((.(((---((...))))).)).))))...))))..))))))(((((((((........)))))-----------------))))... ( -17.00)
>DroYak_CAF1 12604 102 - 1
UGCCUCAGAUUAAGAUAGUUCGACGCAGAAGAAAACUUUUGCGUGCGAA--------UAAUUUGUGAUUUACAAAAGUUUAUAGGAAACUUAGGCAUAGAGCAAUCAAAU
(((((.((((((((((.((((((((((((((....))))))))).))))--------).)))).))))))....((((((.....)))))))))))..((....)).... ( -30.40)
>consensus
UAGCUCAGAUUAAGAUAGUUAGACUCAGGAGCAAACUAUUGCGUGCGAAACGAUUUGUGAUUUGUGAUUCACAAAAGUUUAUAAGAUACUUAGGCAUAGAGUAAUCAAAU
.......(((((.(((((((.............))))))).......((((...((((((........))))))..)))).....................))))).... ( -5.76 =  -7.20 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:12 2006