Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,955,569 – 2,955,708 |
Length | 139 |
Max. P | 0.878662 |
Location | 2,955,569 – 2,955,683 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 82.33 |
Mean single sequence MFE | -32.27 |
Consensus MFE | -28.10 |
Energy contribution | -28.10 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.48 |
Structure conservation index | 0.87 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.699436 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2955569 114 - 27905053 AAUUGAAAAAAAUACA-AAAAGUGAACUGCGUCGGCCGGGAAUCGAACCCGGGUCAACUGCUUGGAAGGCAACUAUGCUAACCAUUACACCACCGACGCCACGUCGAGUUU-GACG ..............((-((...(((...((((((((((((.......)))))..........(((..((((....))))..)))........)))))))....)))..)))-)... ( -32.80) >DroVir_CAF1 4052 114 - 1 ACAUAAGAAAAAGGCA-AAAAGUAACAUGCGUCGGCCGGGAAUCGAACCCGGGUCAACUGCUUGGAAGGCAACUAUGCUAACCAUUACACCACCGACGCCACGGAGCACUC-GGCG .............((.-....((..(..((((((((((((.......)))))..........(((..((((....))))..)))........)))))))...)..))....-.)). ( -31.10) >DroPse_CAF1 6090 111 - 1 ----UCAAAUUUUGCAAAAAAGCGAGCUGCGUCGGCCGGGAAUCGAACCCGGGUCAACUGCUUGGAAGGCAACUAUGCUAACCAUUACACCACCGACGCCACGUGGGUAUG-UCAG ----......(((((......)))))..((((((((((((.......)))))..........(((..((((....))))..)))........)))))))............-.... ( -31.10) >DroYak_CAF1 4583 114 - 1 A-AGAAUAUAAAAGCAAAAAAGUUAACUGCGUCGGCCGGGAAUCGAACCCGGGUCAACUGCUUGGAAGGCAACUAUGCUAACCAUUACACCACCGACGCCACGCUUGUGCC-AAUG .-...........(((...((((.....((((((((((((.......)))))..........(((..((((....))))..)))........)))))))...)))).))).-.... ( -33.40) >DroMoj_CAF1 4062 115 - 1 AUGCAGAAAAAGUGCAAAAAAGUACAAUGCGUCGGCCGGGAAUCGAACCCGGGUCAACUGCUUGGAAGGCAACUAUGCUAACCAUUACACCACCGACGCCAUGUU-CUCACGGUCG .((.((((...((((......))))...((((((((((((.......)))))..........(((..((((....))))..)))........)))))))....))-))))...... ( -34.10) >DroAna_CAF1 4685 114 - 1 AAAUAAAAAAUAGCAA-AAAAGCGAACUGCGUCGGCCGGGAAUCGAACCCGGGUCAACUGCUUGGAAGGCAACUAUGCUAACCAUUACACCACCGACGCCACGUUGUACUC-UAGA ..........(((...-...((((....((((((((((((.......)))))..........(((..((((....))))..)))........)))))))..)))).....)-)).. ( -31.10) >consensus A_AUAAAAAAAAUGCA_AAAAGUGAACUGCGUCGGCCGGGAAUCGAACCCGGGUCAACUGCUUGGAAGGCAACUAUGCUAACCAUUACACCACCGACGCCACGUUGCUCUC_GACG ............................((((((((((((.......)))))..........(((..((((....))))..)))........)))))))................. (-28.10 = -28.10 + -0.00)
Location | 2,955,608 – 2,955,708 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 79.87 |
Mean single sequence MFE | -21.92 |
Consensus MFE | -14.50 |
Energy contribution | -14.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.57 |
Structure conservation index | 0.66 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.714924 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2955608 100 + 27905053 AUAGUUGCCUUCCAAGCAGUUGACCCGGGUUCGAUUCCCGGCCGACGCAGUUCACUUUU-UGUAUUUU-UUUCAAUUCUU--UAC------GGCAUAU-UA-AUUUUUUAUU .((((((((....(((.((((((.(((((.......))))).....((((........)-))).....-..)))))))))--...------)))).))-))-.......... ( -20.80) >DroSec_CAF1 5344 100 + 1 AUAGUUGCCUUCCAAGCAGUUGACCCGGGUUCGAUUCCCGGCCGACGCAGUUCGCUUUU-UGCAUUUU-UUUUAUUUUUC--UAC------AGCAACA-UA-UUUUUUAAUU ...(((((.......((.((((..(((((.......))))).)))))).....((....-.)).....-...........--...------.))))).-..-.......... ( -23.20) >DroSim_CAF1 5357 101 + 1 AUAGUUGCCUUCCAAGCAGUUGACCCGGGUUCGAUUCCCGGCCGACGCAUUUCGCUUUU-UGCAUUUUUUUUUAUUUUUC--UAC------AGCAACU-UA-UUUUUUUAUU ..((((((.......((.((((..(((((.......))))).)))))).....((....-.)).................--...------.))))))-..-.......... ( -23.20) >DroEre_CAF1 5370 107 + 1 AUAGUUGCCUUCCAAGCAGUUGACCCGGGUUCGAUUCCCGGCCGACGCAGUUCGCUUUU-UGCAUUUU-UUUUCUUUGUU--UCCUAGCGGAGCAAAA-UACAAGUGGUAUU ....((((.......((.((((..(((((.......))))).))))))..((((((...-.(((....-.......))).--....))))))))))((-(((.....))))) ( -26.30) >DroYak_CAF1 4622 102 + 1 AUAGUUGCCUUCCAAGCAGUUGACCCGGGUUCGAUUCCCGGCCGACGCAGUUAACUUUUUUGCUUUUA-UAUUCU-UGUUUCUCCUA-------AAAA-UACAAAUGGUAUU .....((((.........((((..(((((.......))))).))))((((.........)))).....-......-...........-------....-.......)))).. ( -18.50) >DroMoj_CAF1 4101 96 + 1 AUAGUUGCCUUCCAAGCAGUUGACCCGGGUUCGAUUCCCGGCCGACGCAUUGUACUUUUUUGCACUUU-UUCUGCAUU--------------GAAUAUGUA-UUUAUUUAUU ...............(((((((..(((((.......))))).))))(((..(.....)..))).....-...)))..(--------------(((((....-..)))))).. ( -19.50) >consensus AUAGUUGCCUUCCAAGCAGUUGACCCGGGUUCGAUUCCCGGCCGACGCAGUUCACUUUU_UGCAUUUU_UUUUAUUUUUU__UAC______AGCAAAA_UA_AUUUUUUAUU ...............((.((((..(((((.......))))).))))))................................................................ (-14.50 = -14.50 + 0.00)
Location | 2,955,608 – 2,955,708 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 79.87 |
Mean single sequence MFE | -23.13 |
Consensus MFE | -15.53 |
Energy contribution | -14.75 |
Covariance contribution | -0.78 |
Combinations/Pair | 1.27 |
Mean z-score | -1.99 |
Structure conservation index | 0.67 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.878662 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2955608 100 - 27905053 AAUAAAAAAU-UA-AUAUGCC------GUA--AAGAAUUGAAA-AAAAUACA-AAAAGUGAACUGCGUCGGCCGGGAAUCGAACCCGGGUCAACUGCUUGGAAGGCAACUAU ..........-..-...((((------...--(((..((((..-........-...((....)).......(((((.......))))).))))...)))....))))..... ( -20.00) >DroSec_CAF1 5344 100 - 1 AAUUAAAAAA-UA-UGUUGCU------GUA--GAAAAAUAAAA-AAAAUGCA-AAAAGCGAACUGCGUCGGCCGGGAAUCGAACCCGGGUCAACUGCUUGGAAGGCAACUAU ..........-..-.((((((------(((--(..........-...(((((-..........))))).((((.((........)).))))..))))......))))))... ( -21.70) >DroSim_CAF1 5357 101 - 1 AAUAAAAAAA-UA-AGUUGCU------GUA--GAAAAAUAAAAAAAAAUGCA-AAAAGCGAAAUGCGUCGGCCGGGAAUCGAACCCGGGUCAACUGCUUGGAAGGCAACUAU ..........-..-(((((((------(((--(..............(((((-..........))))).((((.((........)).))))..))))......))))))).. ( -22.90) >DroEre_CAF1 5370 107 - 1 AAUACCACUUGUA-UUUUGCUCCGCUAGGA--AACAAAGAAAA-AAAAUGCA-AAAAGCGAACUGCGUCGGCCGGGAAUCGAACCCGGGUCAACUGCUUGGAAGGCAACUAU ....(((.((((.-(((((((((....)))--...........-.....)))-))).))))...((((.((((.((........)).)))).)).)).))).((....)).. ( -25.19) >DroYak_CAF1 4622 102 - 1 AAUACCAUUUGUA-UUUU-------UAGGAGAAACA-AGAAUA-UAAAAGCAAAAAAGUUAACUGCGUCGGCCGGGAAUCGAACCCGGGUCAACUGCUUGGAAGGCAACUAU ....(((((((((-((((-------(.(......))-))))))-))))((((.....((.....))((.((((.((........)).)))).))))))))).((....)).. ( -24.20) >DroMoj_CAF1 4101 96 - 1 AAUAAAUAAA-UACAUAUUC--------------AAUGCAGAA-AAAGUGCAAAAAAGUACAAUGCGUCGGCCGGGAAUCGAACCCGGGUCAACUGCUUGGAAGGCAACUAU ..........-......(((--------------((.((((..-...((((......))))........((((.((........)).))))..)))))))))((....)).. ( -24.80) >consensus AAUAAAAAAA_UA_AUUUGCU______GUA__AAAAAAUAAAA_AAAAUGCA_AAAAGCGAACUGCGUCGGCCGGGAAUCGAACCCGGGUCAACUGCUUGGAAGGCAACUAU ................................................(((......)))....((((.((((.((........)).)))).)).)).....((....)).. (-15.53 = -14.75 + -0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:23 2006