| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,376,795 – 23,376,903 |
| Length | 108 |
| Max. P | 0.500000 |
| Location | 23,376,795 – 23,376,903 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 77.64 |
| Mean single sequence MFE | -17.49 |
| Consensus MFE | -12.58 |
| Energy contribution | -12.38 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.16 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.72 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23376795 108 + 27905053 -----UAUUGAGUUU----ACACAUAUCAUUGUUGUAAUGAUCACUUACCACAUUGAGCUGCUUAAGGGCAUUCUCAAUGGUAUCAAGGAUUUUUCUAUUCUCGUCCUGCAAUUCCG -----...(((..((----(((((......)).)))))...)))..(((((..(((((.((((....))))..))))))))))...(((((............)))))......... ( -21.10) >DroSec_CAF1 2416 104 + 1 -----UAUAAAGUUU----AUACAU----UUACUACAACAUUCACUUACCACAUUGAGCUGCUUAAGUGCAUUCUCAAUGGUAUCAAGGAUCUUUCUAUUCUCGUCCUGCAAUUCCG -----..........----......----.................(((((..(((((.(((......)))..))))))))))...(((((............)))))......... ( -15.10) >DroSim_CAF1 2559 104 + 1 -----UUUAAAGUUU----AUACAU----UUACUACAAUAAUCACUUACCACAUUGAGCUGCUUAAGGGCAUUCUCAAUGGUAUCAAGGAUCUUUCUAUUCUCGUCCUGCAAUUCUG -----..........----......----.................(((((..(((((.((((....))))..))))))))))...(((((............)))))......... ( -15.60) >DroEre_CAF1 2373 106 + 1 -------CAUUUUAUAUUAAUACAU----CUAUUACUAUAAUCACUUACCACAUUGAGCUGCUUGAGGGCAUUCUCAAUGGUGUCUAGAAUCUUUCUAUUCUCGUCCUGCAGCUCCG -------....(((((.(((((...----.))))).)))))..............(((((((.((((((((((......))))))((((.....))))..))))....))))))).. ( -23.30) >DroYak_CAF1 2358 108 + 1 -----UACCAAGUAUAUAUGUACAU----AUAUUACAAUAAUCACUUACCACAUUGAGCUGCUUCAGCGCAUUCUCAAUGGUAUCCAGAAUCUUUCUAUUCUCGUCCUGCAAUUCCG -----......((((((((....))----))).)))...............(((((((.(((......)))..)))))))(((.(.(((((......))))).)...)))....... ( -16.60) >DroMoj_CAF1 41213 104 + 1 UAAAUGGCGAAGGAA--------AU----UUACUUGUAU-ACCACAUACCACAUUCAGUUGCUUCAGUGCAUUCUCAAUGGUAUCCAGAAUUUUUCGAUUUUCAUCCUGCAACUCGG ......((..((((.--------..----..........-.....((((((........(((......))).......))))))...(((..........))).))))))....... ( -13.26) >consensus _____UACAAAGUAU____AUACAU____UUACUACAAUAAUCACUUACCACAUUGAGCUGCUUAAGGGCAUUCUCAAUGGUAUCAAGAAUCUUUCUAUUCUCGUCCUGCAAUUCCG ...................................................(((((((.(((......)))..)))))))(((.(.(((((......))))).)...)))....... (-12.58 = -12.38 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:00 2006