| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,375,700 – 23,375,817 |
| Length | 117 |
| Max. P | 0.572425 |
| Location | 23,375,700 – 23,375,817 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.37 |
| Mean single sequence MFE | -27.29 |
| Consensus MFE | -18.41 |
| Energy contribution | -19.05 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.572425 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23375700 117 - 27905053 CACCUCGACCAGCACUAA---CGAGGCUGACGAUGUGUCCAAGUCGGAUACGUAUGAAACCUGUGAUACCUUCCAUACCGCUCAGUCCAACUUAUCGCUGGUUUCAUCGCCCACUAUUAC ......(((((((.(...---.).((((((((..((((((.....))))))(((((.................))))))).)))))).........)))))))................. ( -30.43) >DroPse_CAF1 1344 117 - 1 CACCUCGACCAGCACAAA---CGAGGCAGACGAUGUGUCCAAAUCGGACACUUAUGAGACCUGUGAUACCUUCCAUACCGCCCAAUCCAAUUUCUCGCUUGUCUCAUCGCCCACCAUCAC ..(((((...........---)))))....((((((((((.....))))))....(((((..((((............................))))..)))))))))........... ( -26.89) >DroGri_CAF1 35601 110 - 1 -------ACAAGUGCUAA---UGAUAUGGAUGAUGUGUCCAAAUCGGACACCUAUGAAACCUGUGAUACUUUCCAUACGGCGCACUCCGAUUUCUCGCUAAUGUCAUCGCCCACCAUCAC -------...(((((...---((.((((((....((((((.....)))))).(((.(......).)))...))))))))..))))).((((..(........)..))))........... ( -22.10) >DroWil_CAF1 1333 120 - 1 UACCUCGACAAGCACAAAUGCCGAUGGCGACGAUGUGUCCAAAUCUGAUACAUAUGAAACCUGUGAUACCUUCCAUACGGCCCAAUCGAAUUUCUCGCUUGUUUCAUCGCCCACCAUAAC ....(((.((........)).))).(((((..(((((((.......))))))).((((((..((((....(((.((........)).)))....))))..)))))))))))......... ( -24.30) >DroAna_CAF1 1444 117 - 1 CACCUCGACGAGCACCAA---CGAGGCCGACGACGUGUCCAAGUCGGAUACGUACGAAACCUGCGACACCUUCCACACCGCCCAAUCGAACUUUUCGCUCGUCUCGUCGCCCACAAUCAC .....(((((((.....(---((((..(((..((((((((.....)))))))).(((.....(((.............)))....)))......)))))))))))))))........... ( -31.32) >DroPer_CAF1 1344 117 - 1 CACCUCGACCAGCACAAA---CGAGGCAGACGAUGUGUCCAAAUCGGACACUUAUGAGACCUGUGAUACCUUCCAUACCGCCCAAUCGAAUUUCUCGCUUGUCUCAUCGCCCACCAUCAC ..(((((...........---)))))....((((((((((.....))))))....(((((..((((....(((.((........)).)))....))))..)))))))))........... ( -28.70) >consensus CACCUCGACCAGCACAAA___CGAGGCAGACGAUGUGUCCAAAUCGGACACGUAUGAAACCUGUGAUACCUUCCAUACCGCCCAAUCCAAUUUCUCGCUUGUCUCAUCGCCCACCAUCAC ..(((((..............)))))....((((((((((.....))))))....(((((..((((............................))))..)))))))))........... (-18.41 = -19.05 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:58 2006