Locus 8754

Sequence ID 3R_DroMel_CAF1
Location 23,369,276 – 23,369,386
Length 110
Max. P 0.745891
window14060

overview

Window 0

Location 23,369,276 – 23,369,386
Length 110
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 87.58
Mean single sequence MFE -27.30
Consensus MFE -23.20
Energy contribution -23.20
Covariance contribution -0.00
Combinations/Pair 1.19
Mean z-score -1.56
Structure conservation index 0.85
SVM decision value 0.46
SVM RNA-class probability 0.745891
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23369276 110 + 27905053
AAAA---AAAUCUAUAUAGUACAACUGCUUUCCACGAAUCCUGCAUAAGAUUCGCUGCACAUCCGCGGAUCCCAAUUUUGCCAUGUUGACCAGAGGAUUGCGGGAGUACUCCC
....---..........(((((..((((..(((.((((((........))))))(((.((((..(((((.......))))).))))....))).)))..))))..)))))... ( -28.60)
>DroSec_CAF1 29640 112 + 1
AAAAU-UAAAUCUAUAUAGUCCAACUGCUUUCCACGAAUCCUGCAUAAGAUACGCUGCACAUCCGCGGAUCCCAAUUUUGCCGUGUUGACCAGAGGAUUGCGGGAGUACUCGC
.....-...........(((((..(((.((..((((......(((.((......((((......)))).......)).)))))))..)).))).)))))(((((....))))) ( -23.32)
>DroSim_CAF1 31243 112 + 1
AAAAU-UAAAUCUAUAUAGUACAACUGCUUUCCACGAAUCCUGCAUAAGAUUCGCUGCACAUCCGCUGAUCCCAAUUUUGCCAUGUUGACCAGAGGAUUGCGGGAGUACUCCU
.....-...........(((((............((((((........))))))(((((.((((.(((....((((........))))..))).)))))))))..)))))... ( -25.70)
>DroEre_CAF1 19252 113 + 1
AGCAUUUAAAUCUGUCUAGUAUAACUGCUUUCCACGAAUCCUGCAUCAGAUUCGCUGCACAUCCGCAGAGUCCAACUUUCCCAUGUUGGCCAGAGGUUUGCAGGAAUACUCCU
.................(((((..((((...((.((((((........))))))((((......)))).(.(((((........))))).)...))...))))..)))))... ( -30.50)
>DroYak_CAF1 31246 113 + 1
AAAAUAUAAAUCUUUCUAGUAUAACUGCAUUCCACGAAUCCUGCAUCAGAUUCGUUGCACAUCCGCAGACCCGAACUUCCCCAUGUUGUCCAGAGGUUUGCGGGAAUACUCCU
.................(((((...((((....(((((((........)))))))))))..(((((((((((.(((........))).....).)))))))))).)))))... ( -28.40)
>consensus
AAAAU_UAAAUCUAUAUAGUACAACUGCUUUCCACGAAUCCUGCAUAAGAUUCGCUGCACAUCCGCAGAUCCCAAUUUUGCCAUGUUGACCAGAGGAUUGCGGGAGUACUCCU
.................(((((..((((..(((.((((((........))))))((((......))))....((((........))))......)))..))))..)))))... (-23.20 = -23.20 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:55 2006