| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,367,842 – 23,367,952 |
| Length | 110 |
| Max. P | 0.999894 |
| Location | 23,367,842 – 23,367,952 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 91.58 |
| Mean single sequence MFE | -34.42 |
| Consensus MFE | -29.91 |
| Energy contribution | -31.12 |
| Covariance contribution | 1.21 |
| Combinations/Pair | 1.03 |
| Mean z-score | -3.59 |
| Structure conservation index | 0.87 |
| SVM decision value | 4.42 |
| SVM RNA-class probability | 0.999894 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23367842 110 + 27905053 AAGUAGCCCAUCUUAUCUACGUAUGUACCUAAUUAGUGAAAUGUGCUUGCCUCGGUAUAUUGAAUAAUUAGGUAAGUGAGUAGUACGCAGUGAUGGGUAAGGUACACACA ..((((((((((....((((.(((.((((((((((....((((((((......))))))))...)))))))))).))).))))........)))))))....)))..... ( -34.60) >DroSec_CAF1 28235 110 + 1 AAGCAGCCCAUCUUAUCUACGUAUGUACCUAAUUAGUGAAAUGUGCUUGCCUCGGUAUAUUGAAUAAUUAGGUAAGUGAGUAGUAGGCAGUGAUGGGUAAGGUACACACA ..((.(((((((((..((((.(((.((((((((((....((((((((......))))))))...)))))))))).)))....))))..)).)))))))...))....... ( -36.60) >DroSim_CAF1 29819 110 + 1 AAGCAGCCCAUCUUAUCUACGUAUGUACCUAAUUAGUGAAAUGUGCUUGCCUCGGUAUAUUGAAUAAUUAGGUAAGUGAGUAGUAGGCAGUGAUGGGUAAGGUACAUACA ..((.(((((((((..((((.(((.((((((((((....((((((((......))))))))...)))))))))).)))....))))..)).)))))))...))....... ( -36.60) >DroEre_CAF1 17844 102 + 1 AUGCAGCCCAUCUUAUCU----GUGUACCUAAUUAGUGAAAUGUGCUUGCCUUGGUAUAUUGAAUAAUUAGGUAAGUGAGUAGUAGGCAGUGAUGGGUAAGGUAC----A .(((.(((((((....((----((.((((((((((....((((((((......))))))))...))))))))))............)))).)))))))...))).----. ( -32.82) >DroYak_CAF1 29828 99 + 1 AAGCAGCCCAUCUUAUCU----GUGUACCUAAUUAGUGAAAUGGGCUUGCCUCGGUAUAUUGAAUAAUUAGGUAAGUGAG---CAGGCAGUGAUGGGUAAGGUAC----A ..((.(((((((((..((----((.((((((((((....((((.(((......))).))))...)))))))))).....)---)))..)).)))))))...))..----. ( -31.50) >consensus AAGCAGCCCAUCUUAUCUACGUAUGUACCUAAUUAGUGAAAUGUGCUUGCCUCGGUAUAUUGAAUAAUUAGGUAAGUGAGUAGUAGGCAGUGAUGGGUAAGGUACA_ACA .....(((((((((..((((.((..((((((((((....((((((((......))))))))...))))))))))..))....))))..)).)))))))............ (-29.91 = -31.12 + 1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:54 2006