Locus 8752

Sequence ID 3R_DroMel_CAF1
Location 23,367,308 – 23,367,411
Length 103
Max. P 0.524291
window14058

overview

Window 8

Location 23,367,308 – 23,367,411
Length 103
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 79.60
Mean single sequence MFE -40.29
Consensus MFE -21.52
Energy contribution -23.36
Covariance contribution 1.84
Combinations/Pair 1.19
Mean z-score -1.86
Structure conservation index 0.53
SVM decision value -0.02
SVM RNA-class probability 0.524291
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23367308 103 - 27905053
UGCUAAUCCCGUGCUGGAAUUUCCCUGGAUCCCCAGGUUCCCAGGAUCCACAUGCACACACGAGGAUUCGGAUCUGGAUAA--GGGGU------UGCUAGCGCGGCGGCAA
((((....(((((((((....(((((......((((((((...((((((.(.((....)).).))))))))))))))...)--)))).------..))))))))).)))). ( -42.90)
>DroSec_CAF1 27690 106 - 1
UGCUAAUCCCGUGCUGGAAUUUCCCUGGAUCCCCAGGUUCCCAGGAUCCACAUGCACACACGAGGAUUCGGAUCUGGAUAG--GGGGU---UGUUGCUGGCGCGGCGGCAA
((((....((((((..((((..((((..((((..((((((...((((((.(.((....)).).))))))))))))))))..--)))).---.))).)..)))))).)))). ( -43.10)
>DroSim_CAF1 29245 106 - 1
UGCUAAUCCCGUGCUGGAAUUUCCCUGGAUCCCCAGGUUCCCAGGAUCCACAUGCACAUACGAGGAUUCGGAUCUGGAUAG--GGGGU---UGUUGCUGGCGCGGCGGCAA
((((....((((((..((((..((((..((((..((((((...((((((..............))))))))))))))))..--)))).---.))).)..)))))).)))). ( -41.64)
>DroEre_CAF1 17336 101 - 1
UGCUAAUCCCGUGCUGGAAUUUGCCUGGAUCCC-UGGUUCCCAGGAUCCACAUGCACACACCAGGUUUUCGAUCUGGAUG---GGGGU------GGCUGGCGCGGCGGCAA
((((....((((((..(...(..(((((((((.-(((...))))))))).........(((((((((...))))))).))---.))).------.))..)))))).)))). ( -42.70)
>DroYak_CAF1 29289 104 - 1
UGCUAAUCCCGUGCUGGAAUUUCACAGGAUCCC-UGGUUCCCAGGAUACACAUUCACACACGAGGAUGUGGAUUUCGAUGUGGAGGGU------GGUUGGCGCGGCGGCAA
((((....((((((..(..(((((((.((((((-(((...)))))...(((((((........)))))))))))....)))))))...------..)..)))))).)))). ( -39.20)
>DroAna_CAF1 29269 89 - 1
UGCUAAUCCCGUGCUGGAAUUUCAC----------------CAGAAUAC----CCACACACAACGAUCCGGAUACGGAUGG--GGGUUACGGGUUGCCGGCGCGACGGCAA
((((.....((((((((...(((..----------------..))).((----((....((..(.(((((....))))).)--..))...))))..))))))))..)))). ( -32.20)
>consensus
UGCUAAUCCCGUGCUGGAAUUUCCCUGGAUCCC_AGGUUCCCAGGAUCCACAUGCACACACGAGGAUUCGGAUCUGGAUAG__GGGGU______UGCUGGCGCGGCGGCAA
((((....(((((((((...........(((((.....(((..((((((....................))))))))).....)))))........))))))))).)))). (-21.52 = -23.36 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:53 2006