Locus 8751

Sequence ID 3R_DroMel_CAF1
Location 23,365,893 – 23,365,999
Length 106
Max. P 0.774101
window14057

overview

Window 7

Location 23,365,893 – 23,365,999
Length 106
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 91.23
Mean single sequence MFE -32.70
Consensus MFE -25.52
Energy contribution -25.44
Covariance contribution -0.08
Combinations/Pair 1.19
Mean z-score -1.74
Structure conservation index 0.78
SVM decision value 0.54
SVM RNA-class probability 0.774101
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23365893 106 - 27905053
AUUUUCAAUCCAUAAAGCGGAUCACGUGCUGUUGUCAUGGCGACAGCAUUAAUGCUCCUUCAGUUUGCAUCCUAAUAGAGAGAUGGUGCGUAAGGGGAUUCCCAGA
......(((((....((((......((((((((((....))))))))))...))))((((..((...((((((.....)).))))..))..)))))))))...... ( -30.30)
>DroSec_CAF1 26285 106 - 1
AUUUUCAAUCCAUAAAGCGGAUCACGUGCUGUUGUCAUGGCGACAGCAUUAAUGCUCCUUCAGUUCGCAUCCUAAUAGAGAGAUGCUGCGUAAGGGGAUUCCCAGA
......(((((....((((......((((((((((....))))))))))...))))((((..((..(((((((.....)).))))).))..)))))))))...... ( -33.50)
>DroSim_CAF1 27812 106 - 1
AUUUUCAAUCCAUAAAGCGGAUCACGUGCUGUUGUCAUGGCGACAGCAUUAAUGCUCCUUCAGUUCGCAUCCUAAUAGAGAGAUGCUGCGUAAGGGGAUUCCCAGA
......(((((....((((......((((((((((....))))))))))...))))((((..((..(((((((.....)).))))).))..)))))))))...... ( -33.50)
>DroEre_CAF1 15962 106 - 1
AUUUUCAAUCCACAAAGCGGAUCACGUGCUGUUGUCAUGGAGACAGCAUUAAUGCUCCUGCAGCUCGCAUCCCAAUGGGGAGCUGGAGCGUAAGGGGAUUCCCAGA
......(((((....((((......((((((((........))))))))...))))(((...((((((.((((....))))))..))))...))))))))...... ( -35.00)
>DroYak_CAF1 27933 106 - 1
AUUUUCAAUCCAUAAAGCGGAUCACGUGCUGUUGUCAUGGAGACAGCAUUAAUGCUCCUCCAGUUCACAUCCUGAUGGGGAAAUGGAACGUAAGGAGAUGCUGAGU
........(((((..(((((........)))))...)))))..((((((.....(((((...((((.((((((....))))..))))))...)))))))))))... ( -31.20)
>consensus
AUUUUCAAUCCAUAAAGCGGAUCACGUGCUGUUGUCAUGGCGACAGCAUUAAUGCUCCUUCAGUUCGCAUCCUAAUAGAGAGAUGGUGCGUAAGGGGAUUCCCAGA
.......((((.......))))...((((((((((....)))))))))).....(((((...((...((((((.....)).))))..))...)))))......... (-25.52 = -25.44 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:52 2006