Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 23,364,043 – 23,364,147 |
Length | 104 |
Max. P | 0.561947 |
Location | 23,364,043 – 23,364,147 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 78.64 |
Mean single sequence MFE | -33.73 |
Consensus MFE | -18.04 |
Energy contribution | -18.27 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.06 |
Mean z-score | -1.81 |
Structure conservation index | 0.53 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.561947 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23364043 104 - 27905053 ------GCCUGCGGCUUAUUGGGCAAAUUAGUUUUGCCUGAUUGCAAAUUGUGCAAGG----AGGCUGGCUGCUUCUCCAGGA---CUCCUUCUCCUUUUGACAGGACGUAAAUUCA ------.(((((.((..((..((((((.....))))))..)).))(((..(.(.((((----((.((((........))))..---))))))).)..)))).))))........... ( -31.90) >DroSec_CAF1 24402 106 - 1 ------GCCUGCGGCUUAUUGGGCAAAUUAGUUUUGCCUGAUUGCAAAUUGUGCAAGGAGGGAGGCUGGCUGCUCCUCCUC-----CACGUUCUCCUUUUGACAGAACGUAAAUUCA ------(((...)))...(..((((((.....))))))..)(((((.....)))))((((((..((.....))..).))))-----)(((((((.........)))))))....... ( -36.30) >DroSim_CAF1 24861 106 - 1 ------GCCUGCGGCUUAUUGGGCAAAUUAGUUUUGCCUGAUUGCAAAUUGUGCAAGGAGGGAGGCUGGCUGCUCCUCCUC-----CACGUUCUCCUUUUGACAGGACGUAAAUUCA ------(((...)))...(..((((((.....))))))..)(((((.....)))))((((((..((.....))..).))))-----)(((((((.........)))))))....... ( -35.80) >DroEre_CAF1 14100 109 - 1 ------GCCUGCGGCUUAUUGGGCAAAUUAGUUUUGCCUGAUUGCAAAUUGUGCAAGGAGGCAG--UGCCUGCCACUCAACUGCUGCCACUGCUCCUUGUGACUGGACGUAAAUUCA ------...((((((..((..((((((.....))))))..)).)).....((((((((((.(((--((.(.((.........)).).))))))))))))).))....))))...... ( -38.40) >DroYak_CAF1 25972 93 - 1 ------GCCUGCGGCUUAUUGGGCAAAUUAGUUUUGCCUGAUUGCAAAUUGUGCAAGGA----------CUUCGCCUCCA--------UGUUCUCCUUUUGACAGGACGUAAAUUCA ------...((((((...(..((((((.....))))))..)(((((.....)))))...----------....)))(((.--------((((........))))))).)))...... ( -24.30) >DroAna_CAF1 26405 103 - 1 GCAUCUGCCUGCGGCUUAUUGGGCAAAUUAGUUUUGCCUGAUUGCAAAUUGUACG---G--CCC--AGCCUGGAUAUGGAGAGC----CG---UUCUGGUGACAGGACGUAAAUUCA ..(((((.(((.((((.((..((((((.....))))))..))(((.....))).)---)--)))--)).).)))).((((....----((---(((((....)))))))....)))) ( -35.70) >consensus ______GCCUGCGGCUUAUUGGGCAAAUUAGUUUUGCCUGAUUGCAAAUUGUGCAAGGA___AG__UGGCUGCUCCUCCAC_____C_CGUUCUCCUUUUGACAGGACGUAAAUUCA .........((((((..((..((((((.....))))))..)).))................................................((((......))))))))...... (-18.04 = -18.27 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:51 2006