Locus 8749

Sequence ID 3R_DroMel_CAF1
Location 23,363,138 – 23,363,250
Length 112
Max. P 0.549600
window14055

overview

Window 5

Location 23,363,138 – 23,363,250
Length 112
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 86.57
Mean single sequence MFE -24.00
Consensus MFE -16.00
Energy contribution -17.16
Covariance contribution 1.16
Combinations/Pair 1.10
Mean z-score -1.89
Structure conservation index 0.67
SVM decision value 0.03
SVM RNA-class probability 0.549600
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23363138 112 - 27905053
AAAACCUUGUUUAAUCUUUUACGUAUUCAUUGGCUGCGCUAGUGCAUAGCUUCUCAAACUUUUAUUUUAAAAGUUUUAAAAGAGUCGUAUUAGGCUUUUUCUGAGUGCCCAU
......................(((((((..(((((.((....)).)))))....(((((((((...)))))))))..((((((((......)))))))).))))))).... ( -23.70)
>DroSec_CAF1 23511 112 - 1
AAAACCUUUUUUAAUCUUUUACGUAUUCAUUGGCUGCGCUAGUGAACAGCUUCUCAAACUUUUAUUUUAAAAGUUUGAAAAGCGUCGUAUUAGGCAUUUUCUGAGUCCCCAU
..............(((..((((..(((((((((...)))))))))..((((.(((((((((((...))))))))))).))))..))))..))).................. ( -28.60)
>DroSim_CAF1 23967 112 - 1
AAAACCUUGCUUAGUCUUUUACGUAUUCAUUGGCUGCGCUAGUAAACAGCAUCUCAAACUUUUAUUUUAAAAGUUUGAAAAGCGUCGUAUUAGGCUUUUUCUGAGUGCCCAU
......................(((((((..((..((.((((((....((...(((((((((((...)))))))))))...))....))))))))..))..))))))).... ( -27.00)
>DroEre_CAF1 13212 108 - 1
CAAACCUU-UUUAAUCUUUUAGGUUUUUGCUGGCUG--CUAGUAAACAGCUUCGAAAACUUUUAUUUUAAAAGUUG-GCAAGCGUUGUAUUAGGCUUUUUCCGAGUGCCCAU
.((((((.-...........)))))).....(((..--((((((....((((.(..((((((((...)))))))).-.)))))....))))))((((.....)))))))... ( -23.90)
>DroYak_CAF1 24985 109 - 1
AAAACCUUUUUUAAUCUUUUACGUAUUCAUCGGCUG--CUAGUAAAAAGCUUCAAAAACUUAUACUUCAAAAGUUU-AAAAGCGUUGUAUUAGGCUUUUCCCGAGUGCCCAU
......................((((((...(((..--((((((....((((...((((((.........))))))-..))))....)))))))))......)))))).... ( -16.80)
>consensus
AAAACCUUGUUUAAUCUUUUACGUAUUCAUUGGCUGCGCUAGUAAACAGCUUCUCAAACUUUUAUUUUAAAAGUUU_AAAAGCGUCGUAUUAGGCUUUUUCUGAGUGCCCAU
......................(((((((..((..((.((((((....((((...((((((((.....))))))))...))))....))))))))..))..))))))).... (-16.00 = -17.16 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:50 2006