| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,358,556 – 23,358,651 |
| Length | 95 |
| Max. P | 0.948141 |
| Location | 23,358,556 – 23,358,651 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 74.59 |
| Mean single sequence MFE | -38.69 |
| Consensus MFE | -15.74 |
| Energy contribution | -16.60 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.41 |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.948141 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23358556 95 - 27905053 CCUCGCC------AGCACCGCUGGCAUCCAGCGUUGUUGCUGCACCAUCGACUGCCACUGC------------UGCCGGCACAUCUGCAGCAACGGCACCCGCAUCCGUUGCG ....(((------(((...)))))).......((((((((((((.....((.((((.....------------....))))..))))))))))))))...((((.....)))) ( -37.10) >DroPse_CAF1 20740 110 - 1 CCUCGUCGCCAUCAGCACCACCAGGACC-ACC--AGCAGCAGCAUCUGUUUCUGGUCCUGCUGCAGCGCCAGCUUCAGCUCCAGCUCCAGCCUCUGCACUGGCAUCCGUUGCA .......((((...(((.....((((((-(..--(((((......)))))..)))))))((((.(((...(((....)))...))).))))...)))..)))).......... ( -37.40) >DroSec_CAF1 19092 95 - 1 CCUCGCC------AGCACCGCUGGCUUCAAGCGUAGUUGCUGCAACUUCGACUGCCACUGC------------UGCGGGCACAUCUGCAGCAACGGCCCCCGCAUCCGUUGCG ....(((------(((...))))))....((((....))))(((((..((...(((..(((------------((((((....)))))))))..)))...)).....))))). ( -37.10) >DroSim_CAF1 19518 95 - 1 CCUCGCC------AGCACCGCUGGCAUCCAGCGUAGCUGCUGCACCUUCGACUGCCACUGC------------UGCGGGCACAUCUGCAGCAACGGCCCCAGCAUCCGUUGCG ....(((------(((..((((((...))))))..))))..))..........(((..(((------------((((((....)))))))))..)))....(((.....))). ( -37.90) >DroEre_CAF1 8720 95 - 1 GCUCGCC------ACCACCGGUGGCAUCUAGCGCAGCUGCUGCACCUUCGACUGCCACUGC------------UGCGGGCACAUCUGCAGCAACUGCCCCUGCAUCCGCUGCG (((((((------(((...)))))).......(((((.(..(((........)))..).))------------)))))))......(((((...(((....)))...))))). ( -38.90) >DroYak_CAF1 20285 98 - 1 CCUCGCC------ACCACCGGUGGCAUCCACCGUUGUGGCAGCAGCUUCGAUUGCCACUGC---------UGCUGCAGGCACAUCUGCAGCAAGUGCAACUGCAUCCGUUGCG ....(((------..(((((((((...))))))..)))((((((((.............))---------)))))).)))......(((((..((((....))))..))))). ( -43.72) >consensus CCUCGCC______AGCACCGCUGGCAUCCAGCGUAGCUGCUGCACCUUCGACUGCCACUGC____________UGCGGGCACAUCUGCAGCAACGGCACCCGCAUCCGUUGCG ....((............((((((...)))))).....((((((.......((((...................)))).......))))))....))....(((.....))). (-15.74 = -16.60 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:47 2006