Locus 8746

Sequence ID 3R_DroMel_CAF1
Location 23,358,051 – 23,358,142
Length 91
Max. P 0.945932
window14051

overview

Window 1

Location 23,358,051 – 23,358,142
Length 91
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.86
Mean single sequence MFE -37.80
Consensus MFE -28.00
Energy contribution -27.92
Covariance contribution -0.08
Combinations/Pair 1.23
Mean z-score -1.58
Structure conservation index 0.74
SVM decision value 1.36
SVM RNA-class probability 0.945932
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23358051 91 + 27905053
UCAAAGCCAGUCGGGCGGCACUCGAAAGAGCAGCGGCUGCGGUUGAUGAGCAGCUGGCAAGGGGUAAUCAAUUGUCGCCGCCAAGCAGCCA-----------------------------
.....(((.....)))(((.(((....)))..(((((.(((((((((..((..((....))..)).))))))))).)))))......))).----------------------------- ( -38.00)
>DroPse_CAF1 20199 120 + 1
UCAUAGCCAGUCGUGCGGCACUGGCAAAAGCAGCGGCUGCGGUUGAUGAGCAGCUUGCGAGAAGUAAUCAAUUGCCGCCGCCAGUCGGCAACAACGAACACGCGGACGCCGCCGCCGCCG
.........(.((.(((((((((((....)).(((((.(((((((((..((..((....))..)).))))))))).))))))))).(((..(..((....))..)..)))))))))).). ( -47.20)
>DroEre_CAF1 8224 91 + 1
UCAAAGCCAGUCGGGCGGCACUCGAAAGAGCAGCGGCUGCGGUUGAUGAGCAGCUGGCAAGGGGUAAUCAAUUGUCGCCGCCAAGCAGUCA-----------------------------
.........((..((((((.(((....)))....((((((.........))))))(((((..(.....)..)))))))))))..)).....----------------------------- ( -35.50)
>DroWil_CAF1 23068 103 + 1
UAAAAGCCAGUCGAGCGGCUUUAGAGAUGGCAGCGGCUGCGGUUGAUGAGCAGCUAGCUAGAGGUAAUCAAUUGUCGCCACCCU-CUGCUG----------------GUGGUGGUGGUGG
..((((((........))))))...(((.(((((((((((.........)))))).)))....)).))).((..((((((((..-.....)----------------)))))))..)).. ( -36.70)
>DroYak_CAF1 19774 91 + 1
UCAAAGCCAGUCGGGCGGCACUCGAAAGAGCAGCGGCUGCGGUUGAUGAGCAGCUGGCAAGGGGUAAUCAAUUGUCGCCGCCAAGCAGCCA-----------------------------
.....(((.....)))(((.(((....)))..(((((.(((((((((..((..((....))..)).))))))))).)))))......))).----------------------------- ( -38.00)
>DroAna_CAF1 20804 91 + 1
UCAAAGCCAGCCGAGCGGCUCUGGAAAAGGCAGCGGCUGCCGUUGAUGAGCAACUGGCAAGGGGUAAUCAAUUGUCGCCGCCAGUCAGCCA-----------------------------
(((.((((.((...)))))).)))....(((.(((((.((.((((((..((..((....))..)).)))))).)).)))))......))).----------------------------- ( -31.40)
>consensus
UCAAAGCCAGUCGGGCGGCACUCGAAAGAGCAGCGGCUGCGGUUGAUGAGCAGCUGGCAAGGGGUAAUCAAUUGUCGCCGCCAAGCAGCCA_____________________________
.....((.......))(((.(((....)))..(((((.(((((((((..((..((....))..)).))))))))).)))))......))).............................. (-28.00 = -27.92 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:46 2006