| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,342,336 – 23,342,438 |
| Length | 102 |
| Max. P | 0.691398 |
| Location | 23,342,336 – 23,342,438 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 75.02 |
| Mean single sequence MFE | -26.06 |
| Consensus MFE | -13.14 |
| Energy contribution | -12.95 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.61 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.691398 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23342336 102 - 27905053 UAGAGACAAUUGAGUCCUUCGAUGAC-AAGGAGAUGGCAAACCUU---GAGGUG---------AAAGUGGCGGAAAGUCCUUGUCUC--GAGGAUAAGGGUCUGGAAAACAUUAGGC ...((((..((..(((((.(((.(((-(((((..((.((.(((..---..))).---------....)).)).....))))))))))--))))))))..)))).............. ( -30.90) >DroSec_CAF1 12058 102 - 1 AAGAGAAUAUUGAGUCCUUCGAUGAC-AAGGACAUUGCAAACCUU---GAGAUU---------AAAGUGGCGGAAACUCCUUGUUUC--GAGGAUAAGGGUCUGGAAAACAUUAAGC ...(((...((..(((((.(((.(((-(((((....((....(((---......---------.)))..))(....)))))))))))--))))))..)).))).............. ( -24.20) >DroSim_CAF1 12126 102 - 1 AAGAGACAAUUGAGUCCUUCGAUGAC-AAGGACAUGGCAAACCUU---GAGAUU---------AAAGUGACGGAAACUCCUUGUCUC--GAGGAUAAGGGUCUGGAAAACAUAAAGC ...((((..(((.((((((.......-))))))........((((---(((((.---------.(((.((.(....)))))))))))--)))).)))..)))).............. ( -29.60) >DroEre_CAF1 726 102 - 1 GAGAGAACAUCGAGUCCUUCGAUGAC-AAGGACAUGCCAGGCCUU---GAGAUA---------AAAGUGAUGGAAACUCCUUGUCCC--GAGGAUGAGGGUCUGGAAAACAUAAAGC ...(((...((..(((((.((..(((-(((((....(((...(((---......---------.)))...)))....)))))))).)--))))))..)).))).............. ( -28.50) >DroYak_CAF1 13030 102 - 1 GAGAGAACAUGGAGUCCUUCGAUGAC-AAGGACAUGGCAAACCUU---CAGAUU---------GAAGUGAUGGAAGCUCCUUGUCUC--GAUGAUAAGGGUCUGGAAAACAUUAAGC ........(((...(((.((((.(((-(((((....((...((.(---((....---------....))).))..))))))))))))--)).(((....))).)))...)))..... ( -24.40) >DroAna_CAF1 14524 111 - 1 AAAAGAAAAUCAAA------GAUGAGGAAGAACAGGACUCAGCUCCAGAAGAUAAAGAGUCCAAAGAUGGUAAAAAAAUCUUACCUCCAGAAGAUAGAAGUUUAGAAAUCUUGAAGC .........((((.------(((((((.......((((((................)))))).(((((.........))))).))))....((((....))))....)))))))... ( -18.79) >consensus AAGAGAAAAUUGAGUCCUUCGAUGAC_AAGGACAUGGCAAACCUU___GAGAUU_________AAAGUGACGGAAACUCCUUGUCUC__GAGGAUAAGGGUCUGGAAAACAUUAAGC .............((((((........)))))).....................................((((....((((((((.....)))))))).))))............. (-13.14 = -12.95 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:44 2006