Locus 8743

Sequence ID 3R_DroMel_CAF1
Location 23,329,794 – 23,329,913
Length 119
Max. P 0.500000
window14047

overview

Window 7

Location 23,329,794 – 23,329,913
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.98
Mean single sequence MFE -32.22
Consensus MFE -27.84
Energy contribution -28.04
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.31
Structure conservation index 0.86
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23329794 119 + 27905053
GAUAUC-CCAGCAGAAACUAGCAGUCUCAUCUCAUGGCCCCGCAGCCUGAUCUAUGGCACUGCAAGUGUCACAUAAAUUACAAGCGGAAGCAUCAAAAUGCUGUCAAAUGAAGGAAGGGU
....((-((((((((.(((.(((((.((((.(((.(((......))))))...)))).))))).))).)).............((....)).......)))))((....)).)))..... ( -32.90)
>DroSec_CAF1 127082 118 + 1
GAUAUC-CCAGAAGAAACUAGCAGUCUCAUCUCUUGGCCCCGCUGCCUGAUCUAUGGCACUGCAAGUGUCACAUAAAUUACAAGCGGAAGCAUCAAAAUGCUGUCAAAUGAAG-AAGGCU
......-............(((..((((((...(((((.(((((...((((.((((((((.....))))..)))).))))..))))).(((((....))))))))))))).))-)..))) ( -30.30)
>DroSim_CAF1 131428 119 + 1
GAUAUC-CCAGCAGAAACUAGCAGUCUCAUCUCUUGGCCCCGCUGCCUGAUCUAUGGCACUGCAAGUGUCACAUAAAUUACAAGCGGAAGCAUCAAAAUGCUGUCAAAUGAAGGAAGGGU
.....(-((.((........))..(((..((..(((((.(((((...((((.((((((((.....))))..)))).))))..))))).(((((....))))))))))..)).))).))). ( -31.40)
>DroEre_CAF1 133442 119 + 1
GAUAUC-CCAGCAGAAACUAGCAGUCUCAUCUCUUGGCCCCGCUGCCUGAUCUAUGGCACUGCAAGUGUCACAUAAAUUACAAGCGGAAGCAUCAAAAUGCUGUCAAAUGAAGGAAGGGU
.....(-((.((........))..(((..((..(((((.(((((...((((.((((((((.....))))..)))).))))..))))).(((((....))))))))))..)).))).))). ( -31.40)
>DroYak_CAF1 139028 120 + 1
GAUAUCCCCAGCAGAAACUAGCAGUCUCAUCUCUUGGCCCCGCUGCCUGAUCUAUGGCACUGCAAGUGUCACAUAAAUUACAAGCGGAAGCAUCAAAAUGCUGUCAAAUGUAGGAGGGGA
....(((((.((........))..((((((...(((((.(((((...((((.((((((((.....))))..)))).))))..))))).(((((....))))))))))))).))).))))) ( -35.10)
>consensus
GAUAUC_CCAGCAGAAACUAGCAGUCUCAUCUCUUGGCCCCGCUGCCUGAUCUAUGGCACUGCAAGUGUCACAUAAAUUACAAGCGGAAGCAUCAAAAUGCUGUCAAAUGAAGGAAGGGU
........(((((((.(((.(((((.((((.....(((......)))......)))).))))).))).)).............((....)).......)))))................. (-27.84 = -28.04 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:43 2006