Locus 8740

Sequence ID 3R_DroMel_CAF1
Location 23,326,865 – 23,326,960
Length 95
Max. P 0.716481
window14041

overview

Window 1

Location 23,326,865 – 23,326,960
Length 95
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 77.34
Mean single sequence MFE -22.20
Consensus MFE -9.00
Energy contribution -9.67
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.34
Structure conservation index 0.41
SVM decision value 0.39
SVM RNA-class probability 0.716481
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23326865 95 - 27905053
GUUUGUU----GUUUGAACUUUUGGUUCAUAAAUAUUAACAGCUAUUAAAGCACAAACAAAUACGGG-CG-AACAAGGCCAGUUGUUCAGCCCGACAAAUA
((((((.----...(((((.....)))))............(((.....))))))))).....((((-((-(((((......)))))).)))))....... ( -27.60)
>DroPse_CAF1 126301 95 - 1
GUUUGUUUGCCAUUUGAACUUUUAGUUCAUAAAUAUUAACGGCUAUUAAAACACACUGAAAUAGUCGUCGGACUACGGCUA------CUGCCGGAUGGCUG
........(((((((((((.....)))))......(..(((((((((............)))))))))..)....((((..------..)))))))))).. ( -27.60)
>DroSec_CAF1 124144 95 - 1
GUUUGUU----GUUUGAACUUUUGGUUCAUAAAUAUUAACAGCUAUUAAAGCACAAACAAAUACGGG-CA-AACAAGGCCAGCAGUUCAGCCCGGCAAAUA
((((((.----...(((((.....)))))............(((.....))))))))).....((((-(.-(((...(....).)))..)))))....... ( -21.30)
>DroSim_CAF1 128514 95 - 1
GUUUGUU----GUUUGAACUUUUGGUUCAUAAAUAUUAACAGCUAUUAAAGCACAAACAAAUACGGG-CA-AACAAGGCCAGCAGUUCAGCCCGGCAAAUA
((((((.----...(((((.....)))))............(((.....))))))))).....((((-(.-(((...(....).)))..)))))....... ( -21.30)
>DroEre_CAF1 130472 92 - 1
GUUUGUU----GUUUGAACUUUCAGUUCAUAAAUAUUAACAGCUAUUAAAGCACAAACAAACACUGG-CA-CCCAAGGCCA---GUUCGGGCCAGCAAAUG
(((((((----...(((((.....)))))............(((.....)))...))))))).((((-(.-((.((.....---.)).)))))))...... ( -22.30)
>DroYak_CAF1 135972 75 - 1
GUUUGUU----GUUUGAACUUUUAGUUCAUAAAUAUUAACAGCUAUUAAAGCACAAACAAACACUGC-CA-CCGAAGACCA--------------------
(((((((----...(((((.....)))))............(((.....)))...))))))).....-..-..........-------------------- ( -13.10)
>consensus
GUUUGUU____GUUUGAACUUUUAGUUCAUAAAUAUUAACAGCUAUUAAAGCACAAACAAAUACGGG_CA_AACAAGGCCA___GUUCAGCCCGGCAAAUA
((((((........(((((.....)))))............(((.....)))))))))........................................... ( -9.00 =  -9.67 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:37 2006