Locus 8739

Sequence ID 3R_DroMel_CAF1
Location 23,326,655 – 23,326,745
Length 90
Max. P 0.954807
window14040

overview

Window 0

Location 23,326,655 – 23,326,745
Length 90
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 72.11
Mean single sequence MFE -26.61
Consensus MFE -15.03
Energy contribution -15.64
Covariance contribution 0.61
Combinations/Pair 1.17
Mean z-score -1.91
Structure conservation index 0.56
SVM decision value 1.45
SVM RNA-class probability 0.954807
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23326655 90 - 27905053
----UGGCUUUUUU-GUGGGCU------CAG-CCUUUUGGCCUAAUGUUCAUUUAAUUAAAAGCGGAAAUUGAG-CAAGUGAGCCAG------CGAGCCAACGAGCCAA-
----((((((.(((-((.((((------(((-((....)))....((((((...................))))-))..)))))).)------)))).....)))))).- ( -29.31)
>DroPse_CAF1 126067 103 - 1
----UGGUCUGAGCAAAGGGCCAAGUGUGAGCCGUCUCGGCCUAAUGUUCGUUUAAUUAAAAGCGGAAAUUGAG-CAAGUGAGCAGGGAGUCGGGAGUCAG-GAGCCAC-
----((((((.......)))))).(((.(..((.(((((((((..(((((((((((((.........)))))))-)....))))).)).)))))))....)-)..))))- ( -29.60)
>DroSec_CAF1 123946 82 - 1
----UGGCUUUUUU-GUGGGCU------CAG-CCUUUUGGCCUAAUGUUCAUUUAAUUAAAAGCGGAAAUUGAG-CAAGUGAGCC--------------AGCGAGCCAA-
----((((((....-((.((((------(((-((....)))....((((((...................))))-))..))))))--------------.)))))))).- ( -27.31)
>DroEre_CAF1 130277 82 - 1
----UGGCUUUUUU-GUGGGCU------CAG-CCCUUUGGCCUAAUGUUCAUUUAAUUAAAAGCGGAAAUUGAG-CCUGUGAGCCA--------------GUGAGCCAG-
----((((((.((.-.((((((------((.-((((((.....(((....)))......)))).))....))))-))))..))...--------------..)))))).- ( -24.70)
>DroWil_CAF1 132488 82 - 1
----UGGUCUGAGCA--GGGACAGGU-------UCUAUGGCCUAAUGCUCAUUUAAUUAAAAGCGGAAAUUGAGGCAAGUGACCAAG---------------GAACCAGA
----..((((.....--.)))).(((-------(((.(((.(...((((...((((((.........))))))))))...).))).)---------------)))))... ( -20.10)
>DroYak_CAF1 135772 86 - 1
UUGCUGGCUUUUUU-GUGGGCU------CAG-CCUUUUGGCCUAAUGUUCAUUUAAUUAAAAGCGGAAAUUGAG-CAAGUGAGCCA--------------GUGAGCCAG-
...(((((((....-...((((------(((-((....)))....((((((...................))))-))..)))))).--------------..)))))))- ( -28.61)
>consensus
____UGGCUUUUUU_GUGGGCU______CAG_CCUUUUGGCCUAAUGUUCAUUUAAUUAAAAGCGGAAAUUGAG_CAAGUGAGCCA______________G_GAGCCAG_
....((((((......((((((................))))))..((((((((..((((.........))))...))))))))..................)))))).. (-15.03 = -15.64 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:36 2006