Locus 8736

Sequence ID 3R_DroMel_CAF1
Location 23,323,817 – 23,323,916
Length 99
Max. P 0.642210
window14033

overview

Window 3

Location 23,323,817 – 23,323,916
Length 99
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 81.97
Mean single sequence MFE -32.67
Consensus MFE -21.92
Energy contribution -23.80
Covariance contribution 1.88
Combinations/Pair 1.00
Mean z-score -1.74
Structure conservation index 0.67
SVM decision value 0.23
SVM RNA-class probability 0.642210
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23323817 99 - 27905053
----AGAAGC--GAGGAGCUGAGGAGUCCUUUGGGGAGU-UGUUGCCGAGGUGACUUGGCAACUUUGUUGCCAUGCAACUUUAAUGAGUUGACGCACGAGACCACA
----.....(--((((..((....))..)))))((....-.(((((((((....)))))))))(((((.((....((((((....))))))..))))))).))... ( -35.50)
>DroSec_CAF1 121131 97 - 1
----AGAAGC--GAGAAGCCGU--CGUCCUUUGGGGAGU-UGUUGCCGAGGUGACUUGGCAACUUUGUUGCCAUGCAACCUUAAUGAGUUGACGCACGAGACCACA
----....((--.....))(((--((((((((((((...-.(((((((((....))))))))).((((......)))))))))..)))..)))).)))........ ( -32.10)
>DroSim_CAF1 125476 97 - 1
----AGAAGC--GAGGAGCCGU--CGUCCUUUGGGGAGU-UGUUGCCGAGGUGACUUGGCAACUUUGUUGCCAUGCAACUUUAAUGAGUUGACGCACGAGACCACA
----.((((.--((.((....)--).)))))).((....-.(((((((((....)))))))))(((((.((....((((((....))))))..))))))).))... ( -34.10)
>DroEre_CAF1 127427 95 - 1
----AG----UGGUGGAGCUGU--AGUCCUUUGGGGAGU-UGUUGCGGAGGUGACUUGGCAACUUUGUUGCCAUGCAACUUUAAUGAGUUGACGCACGAGACCACA
----.(----((((........--..(((.....))).(-(((.((((((....)))((((((...))))))...((((((....)))))).))))))).))))). ( -33.20)
>DroYak_CAF1 132770 100 - 1
----AGGUGUUGGUGGAGCUGU--AGUCCUUUGGGGAGUUUGUUGCCGAGGUGACUUGGCAACUUUGUUGCCAUGCAACUUUAAUGAGUUGACGCACGAGACCACA
----.(((.((((((((((...--..(((.....)))....(((((((((....)))))))))...))).)))).((((((....)))))).....))).)))... ( -38.60)
>DroAna_CAF1 116942 90 - 1
GUCGAAGUGAAGUGUAAGCUGU--AAGCAGUAAGCGAGU-GG-------------UUGCCAACUUUGUUGCCAUGCAACUUUAAUGAGUUGACGCACGAGACCGCA
(((...((.........((((.--...))))..(((.((-((-------------(.((.......)).))))).((((((....)))))).)))))..))).... ( -22.50)
>consensus
____AGAAGC__GAGGAGCUGU__AGUCCUUUGGGGAGU_UGUUGCCGAGGUGACUUGGCAACUUUGUUGCCAUGCAACUUUAAUGAGUUGACGCACGAGACCACA
...............................(((.......(((((((((....)))))))))(((((.((....((((((....))))))..))))))).))).. (-21.92 = -23.80 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:30 2006