Locus 8732

Sequence ID 3R_DroMel_CAF1
Location 23,316,687 – 23,316,777
Length 90
Max. P 0.621782
window14023

overview

Window 3

Location 23,316,687 – 23,316,777
Length 90
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 82.70
Mean single sequence MFE -25.65
Consensus MFE -17.78
Energy contribution -17.33
Covariance contribution -0.44
Combinations/Pair 1.10
Mean z-score -1.79
Structure conservation index 0.69
SVM decision value 0.18
SVM RNA-class probability 0.621782
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23316687 90 - 27905053
CA-------CU-GG-------GAUACUGCC-AUUGGCGUCU-AUGUGCAUUAAUGUGCGUGAGCACAUCUGAUUUUUAUGAGACGAUUAUGAGUUGCCUUUUAUUAU
..-------..-((-------(.....(((-((...(((((-(((...((((((((((....)))))).))))...))).)))))...))).))..)))........ ( -23.90)
>DroPse_CAF1 116910 89 - 1
CA----------GG-------GGCACUGGC-ACUGGCACAUCCUAUGCAUUAAUGUGCGUGAGCACAUCUGAUUUUUAUGAGACGAUUAUGAGUUGCUUUUUAUUAU
.(----------((-------((((...((-(..((.....))..)))((((((((((....)))))).)))).(((((((.....))))))).)))))))...... ( -21.80)
>DroEre_CAF1 120437 90 - 1
-------AUAC-GC-------CGUACUGCC-AUUGGCGUCC-AUGUGCAUUAAUGUGCGUGAGCACAUCUGAUUUUUAUGAGACGAUUAUGAGUUGCCUUUUAUUAU
-------....-..-------.(((..(((-((...(((((-(((...((((((((((....)))))).))))...)))).))))...))).))))).......... ( -24.10)
>DroYak_CAF1 125345 98 - 1
CACUGGAAUACUGG-------GAUACUGCC-AUUGGCGUCU-AUGUGCAUUAAUGUGCGUGAGCACAUCUGAUUUUUAUGAGACGAUUAUGAGUUGCCUUUUAUUAU
......((((..((-------(.....(((-((...(((((-(((...((((((((((....)))))).))))...))).)))))...))).))..)))..)))).. ( -26.40)
>DroAna_CAF1 109879 98 - 1
CA-------GU-GGGGCAACGUAUCCUGCCUGCUGGCGUCU-AUGGACAUUAAUGUGCGUGAGCACAUCUGAUUUUUAUGAGACGAUUAUGAGUUGCCUUUUAUUAU
..-------..-((((((((..(((..(((....)))((((-(((((.((((((((((....)))))).)))).))))).))))))).....))))))))....... ( -35.90)
>DroPer_CAF1 117399 89 - 1
CA----------GG-------GGCACUGGC-ACUGGCACAUCCUAUGCAUUAAUGUGCGUGAGCACAUCUGAUUUUUAUGAGACGAUUAUGAGUUGCUUUUUAUUAU
.(----------((-------((((...((-(..((.....))..)))((((((((((....)))))).)))).(((((((.....))))))).)))))))...... ( -21.80)
>consensus
CA__________GG_______GAUACUGCC_ACUGGCGUCU_AUGUGCAUUAAUGUGCGUGAGCACAUCUGAUUUUUAUGAGACGAUUAUGAGUUGCCUUUUAUUAU
..................................((((..........((((((((((....)))))).)))).(((((((.....))))))).))))......... (-17.78 = -17.33 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:21 2006