Locus 8730

Sequence ID 3R_DroMel_CAF1
Location 23,313,575 – 23,313,670
Length 95
Max. P 0.526145
window14020

overview

Window 0

Location 23,313,575 – 23,313,670
Length 95
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 83.55
Mean single sequence MFE -29.70
Consensus MFE -19.64
Energy contribution -19.70
Covariance contribution 0.06
Combinations/Pair 1.25
Mean z-score -1.99
Structure conservation index 0.66
SVM decision value -0.01
SVM RNA-class probability 0.526145
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23313575 95 + 27905053
----GUGUGUGCAUG-----------AGUGGUGGCGAAAUGAAAUUAACAAAUCAUUUCACUUAUGGCCACUGGGGCAUCUGCUUCCACUUGGCUCUAACAUCACUUUGA
----.......((.(-----------(((((((..(((((((..........)))))))..(((.(((((.((((((....)).))))..))))).))))))))))))). ( -28.30)
>DroSim_CAF1 115277 99 + 1
GUGAGUGUGUGCAUG-----------AGUGGUGGCGAAAUGAAAUUAACAAAUCAUUUCACUUAUGGCCACUGGGGCAUCUGCUUCCACUUGGCUCUAACAUCACUUUGA
((((.(((..((.((-----------(((((.((((((((((..........))))))).......(((.....)))....))).)))))))))....)))))))..... ( -31.30)
>DroEre_CAF1 117355 99 + 1
GUGUGAGUGUGCAUG-----------AGUGGUGGCGAAAUGAAAUUAACAAAUCAUUUCACUUAUGGCCACUGGGGCAUCUGCUGCCACUUGGCUCUAACAUCACUUUGA
..((((((..((.((-----------(((((..(((((((((..........))))))).......(((.....)))....))..)))))))))....)).))))..... ( -33.60)
>DroYak_CAF1 122202 99 + 1
GUGUGUGUGUGCAUG-----------AGUGGUGGCGAAAUGAAAUUAACAAAUCAUUUCACUUAUGGCCACUGGGGCAUCUGCUACCACUUGGCUCUAACAUCACUUUGA
((((((....((.((-----------((((((((((((((((..........))))))).......(((.....)))....)))))))))))))....))).)))..... ( -35.00)
>DroAna_CAF1 105786 99 + 1
AUGCGUAUGGGAAUG-----------AGUGGUGGCGAAAUGAAAUUAACAAAUCAUUUCACUUAUGGGCACUGGGGCAUCUGCUUCCACUUAGUCUCGGCAUCACUUUGA
((((...(((((.((-----------(((((.((((((((((..........)))))))........((......))....))).))))))).)))))))))........ ( -28.40)
>DroPer_CAF1 114563 108 + 1
--GUGAGUUUCCCUUGGCUGUCUCCCACUCCUUCUGUAAUGAAAUUAACAAAUCAUUUCACUUAUGGGCACAGGGGCAUCUGCUUCCACUUAUUUCUGGCAGCGCUUUGA
--..((((..((((((((.((.....)).....((((((((((((.........)))))).)))))))).)))))).....(((.(((........))).)))))))... ( -21.60)
>consensus
GUGUGUGUGUGCAUG___________AGUGGUGGCGAAAUGAAAUUAACAAAUCAUUUCACUUAUGGCCACUGGGGCAUCUGCUUCCACUUGGCUCUAACAUCACUUUGA
..........................(((((((..(((((((..........)))))))..(((.(((((.((((((....))).)))..))))).)))))))))).... (-19.64 = -19.70 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:18 2006