Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,940,234 – 2,940,354 |
Length | 120 |
Max. P | 0.658457 |
Location | 2,940,234 – 2,940,354 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.89 |
Mean single sequence MFE | -49.05 |
Consensus MFE | -31.27 |
Energy contribution | -32.00 |
Covariance contribution | 0.73 |
Combinations/Pair | 1.32 |
Mean z-score | -1.57 |
Structure conservation index | 0.64 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658457 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2940234 120 + 27905053 UUGGGUCCGGCCAGAGGACGGCCAUCUGGGAACUGGAUGGUGCUCUCGCCACUGGUUGACACUAGAGUGGGGGCGUGGCCGUAACCAAAGCCCUUGGGGCCGAAGAGCUUGCCGUAGCAG ((((...((((((.......((((((..(...)..))))))((((((((..(((((....))))).)))))))).))))))...)))).((((...))))......(((......))).. ( -50.70) >DroVir_CAF1 25185 120 + 1 UUCUGACCAUUUAAUGGACCACCGUCGGGAAACUGGAUGGUGGACUCGCCGCUGGUCGAGACGAGCGUGGGCGCAUGGCCAUAGCCAAAGCCCUUGGGACCAAAGUGCUUGCCAUAGCAG ..............(((.((((((((((....)).)))))))).(((..((((.((....)).)))).((((...((((....))))..))))..))).)))...((((......)))). ( -47.10) >DroGri_CAF1 30218 120 + 1 CGUUGACCGGUCAACGGACGACCAUCGGGAAACUGGAUGGUUGACUCACCAGUGGUGGACACCAAGGUGGGGGCAUGGCCAUAGCCAAAGCCCUUGGGGCCGAAGUGUUUGCCAUAGCAG ((((((....))))))..((((((((((....)).))))))))........((((..(((((...(((((((((.((((....))))..))))))...)))...)))))..))))..... ( -55.40) >DroWil_CAF1 18434 120 + 1 UUUUGACCAUUGAAUGGACGUCCAUCUGGGAAUUGAAUUGUCGACUCACCACUGGUGGACACCAGAGUUGGAGCAUGGCCAUAACCGAAUCCCUUGGGGCCAAAGAGUUUGCCAUAACAG .((((.((((...))))..((((((((((((.((((....)))).)).)))..)))))))..))))((((..((((((((....((((.....))))))))).......)))..)))).. ( -34.81) >DroMoj_CAF1 28609 120 + 1 UUCUGGCCAUUCAGUGGGCCGCCAUCGGGAAACUGAAUGGUGGACUCGCCGCUGGUGGAGACCAGGGUGGGGGCAUGUCCAUAGCCAAAGCCCUUGGGGCCGUACCGCUUGCCGUAGCAG ....((((...(((.(((((((((((((....))).))))))..((((((.(((((....)))))))))))(((.........)))...))))))).)))).....(((......))).. ( -54.30) >DroPer_CAF1 21041 120 + 1 CGCGCUCCGUUCAGGGGACCGCCAUCGGGGAACUGAAUGGUGGACUCGCCGCUGGUCGACACCAGAGUGGGGGCAUGGCCAUAGCCAAAGCCCUUAGGGCCAAAGUGCUUGCCAUAGCAG .(((((((.....((.((((((((((((....))).)))))))..)).)).(((((....)))))....)))))(((((...((((...((((...))))....).))).))))).)).. ( -52.00) >consensus UUCUGACCAUUCAAUGGACCGCCAUCGGGAAACUGAAUGGUGGACUCGCCACUGGUGGACACCAGAGUGGGGGCAUGGCCAUAGCCAAAGCCCUUGGGGCCAAAGUGCUUGCCAUAGCAG ......(((.....))).((((((((((....))).))))))).(((((..(((((....))))).))))).(((((((...(((....((((...))))......))).))))).)).. (-31.27 = -32.00 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:16 2006