Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 23,307,586 – 23,307,689 |
Length | 103 |
Max. P | 0.548622 |
Location | 23,307,586 – 23,307,689 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.75 |
Mean single sequence MFE | -29.74 |
Consensus MFE | -17.75 |
Energy contribution | -17.92 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.08 |
Mean z-score | -1.59 |
Structure conservation index | 0.60 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.548622 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23307586 103 + 27905053 C-AGC-----------CCACAGAACCCACUCACCUGUACAGGUGAGCCAUGUUGUCAGCGGAAGGUAGCUACAAAUUCUC----GUUGC-AAAAGCUUUUAGUGAAUUUAUGGCAAGGAA .-...-----------((.....(((..(((((((....)))))))((.((....))..))..))).((((.((((((.(----...((-....)).....).)))))).))))..)).. ( -27.30) >DroPse_CAF1 108069 103 + 1 C-AUA-----------CCGCAUCCCUUUGGCACCUGUACAGGUGAGCCAUGUUGUCAGCGGAAGGCAGCAACAAAUUCUC----GUUGC-AAAAGCUUUUAGUGAAUUUAUGGCAAGGAA .-...-----------.......((((...(((((....))))).((((((...(((...((((((.(((((........----)))))-....))))))..)))...)))))))))).. ( -32.20) >DroWil_CAF1 112162 88 + 1 -------------------------------CCGGGGCCAGGUGAGCCAUGUUGUCAGCGGAAGGUAGCAACAAAUUUUCGUUCGUUGG-AAAAGCUUUUAGUAAAUUUAUGGCAAGGAA -------------------------------((...((((...((((..(((((..(.(....).)..)))))..((((((.....)))-))).))))............))))..)).. ( -22.36) >DroYak_CAF1 115379 104 + 1 CCAGC-----------ACACAGAACACACUCACCUGUACAGGUGAGCCAUGUUGUCAGCGGAAGGUAGCUACAAAUUCUC----GUUGC-AAAAGCUUUUAGUGAAUUUAUGGCAAGGAA ((.((-----------..((((......(((((((....))))))).....))))..))........((((.((((((.(----...((-....)).....).)))))).))))..)).. ( -27.40) >DroAna_CAF1 99833 115 + 1 C-AGGCACCUGCCACCUCCUUCUACAGACUCACCUGUACAGGUGAGCCAUGUUGUCAGCGGAAGGUAGCUACAAAUUCUC----GUUGCGAAAAGCUUUUAGUGAAUUUAUGGCAAGGAA .-.(((....))).((((((((..(.(.(((((((....))))))).).((....)))..)))))..((((.((((((.(----...((.....)).....).)))))).)))).))).. ( -37.00) >DroPer_CAF1 108549 103 + 1 C-AUA-----------CCGCAUCCCUUUGGCACCUGUACAGGUGAGCCAUGUUGUCAGCGGAAGGCAGCAACAAAUUCUC----GUUGC-AAAAGCUUUUAGUGAAUUUAUGGCAAGGAA .-...-----------.......((((...(((((....))))).((((((...(((...((((((.(((((........----)))))-....))))))..)))...)))))))))).. ( -32.20) >consensus C_AGA___________CCACAGAACACACUCACCUGUACAGGUGAGCCAUGUUGUCAGCGGAAGGUAGCAACAAAUUCUC____GUUGC_AAAAGCUUUUAGUGAAUUUAUGGCAAGGAA ..............................(((((....))))).(((((((((((.......))))))...((((((.(....(((......))).....).)))))))))))...... (-17.75 = -17.92 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:11 2006