Locus 8725

Sequence ID 3R_DroMel_CAF1
Location 23,305,755 – 23,305,875
Length 120
Max. P 0.949074
window14011

overview

Window 1

Location 23,305,755 – 23,305,875
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.50
Mean single sequence MFE -43.05
Consensus MFE -38.09
Energy contribution -38.53
Covariance contribution 0.44
Combinations/Pair 1.14
Mean z-score -1.60
Structure conservation index 0.88
SVM decision value 1.39
SVM RNA-class probability 0.949074
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23305755 120 - 27905053
AUACGAGCCUGCAUCUGUCCAAAUCUCAGUCCAAUGCAGUUGCGAGGACCUUCUCCGAAGGGAAGCCAGGCAACCGAGGGACGUUUGGCGGAUUCUUCUGGAGAAAACCUCUCCGGUCGA
...(((.(((((((.((..(........)..))))))))....((((...((((((((((((..(((((((..((...))..)))))))...)))))).))))))..))))...).))). ( -42.60)
>DroSec_CAF1 103169 120 - 1
AUACGAGCCUGCAUCUGUCCAAAUCUCAGUCCAAUGCAGUUGCGAGGACCUUCUCCGAAGAGAAGCCAGGCAACCGAGGGACGUUUGGCGGAUUCUUCUGGAGAAAACCUCUCCGGCCGA
...((.(((.(.(((((.((((((....((((....(.(((((..((..((((((....))))))))..))))).)..))))))))))))))).)....(((((.....)))))))))). ( -45.20)
>DroSim_CAF1 107361 120 - 1
AUACGAGCCUGCAUCUGUCCAAAUCUCAGUCCAAUGCAGUUGCGAGGACCUUCUCCGAAGGGAAGCCAGGCAACCGAGGGACGUUUGGCGGAUUCUUCUGGAGAAAACCUCUCCGGCCGA
...((.(((.(.(((((.((((((....((((....(.(((((..((.(((((...)))))....))..))))).)..))))))))))))))).)....(((((.....)))))))))). ( -44.60)
>DroEre_CAF1 109560 120 - 1
AUGCGAGCCUGCAUCUGUCCAAAUCUCAGUCCAAUGCAGUUGCGAGGACCUUCGCCGAAGGGCAGCCAGGCAACCGAAGGACGUUUGGCGGAUUCUUCUGGAGAAAACCGCUCCGGCCGA
...((.(((.(.(((((.((((((.((.((((..(((....))).))))(((((((....))).....(....).)))))).))))))))))).)....((((.......))))))))). ( -43.40)
>DroYak_CAF1 113536 120 - 1
AUGCGAGCCUGCAUCUGCCCAAAUCUCAGUCCAAUGCAGUUGCGAGGACCUUCUCCAAAAGGCAGCCAGGCAACCGAAGGACGUUUGGCGCAUUCCUCUGGGGAAAAUCUCUCCGGCCUA
((((..(((((((.((((.................)))).)))..(((.....)))...)))).(((((((..((...))..)))))))))))....(((((((.....))))))).... ( -39.43)
>consensus
AUACGAGCCUGCAUCUGUCCAAAUCUCAGUCCAAUGCAGUUGCGAGGACCUUCUCCGAAGGGAAGCCAGGCAACCGAGGGACGUUUGGCGGAUUCUUCUGGAGAAAACCUCUCCGGCCGA
...((.(((.(((.((((.................)))).)))((((...((((((((((((..(((((((..((...))..)))))))...)))))).))))))..))))...))))). (-38.09 = -38.53 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:10 2006