Locus 8724

Sequence ID 3R_DroMel_CAF1
Location 23,305,302 – 23,305,395
Length 93
Max. P 0.634584
window14010

overview

Window 0

Location 23,305,302 – 23,305,395
Length 93
Sequences 5
Columns 93
Reading direction forward
Mean pairwise identity 89.57
Mean single sequence MFE -25.73
Consensus MFE -18.60
Energy contribution -19.56
Covariance contribution 0.96
Combinations/Pair 1.15
Mean z-score -1.87
Structure conservation index 0.72
SVM decision value 0.21
SVM RNA-class probability 0.634584
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23305302 93 + 27905053
UUAAGGGCCUAACCAUGGAUGAGAUCGUUGCCCAAGCUUUUGUGUUCUUCAUCGCUGGCUUUGAUACCUCAUCCUCCACCAUGGGAUUUGCCC
....((((....(((((((((((((((..(((..(((...((.......))..))))))..))))..)))))))......)))).....)))) ( -29.20)
>DroSec_CAF1 102716 93 + 1
UUAAGGGACUAACCAUGGAUGAGAUCGUUGCCCAAGCCUUUGUGUUCUUCAUCGCUGGCUUUGAUACCUCAUCCUCCACCAUGACAUUUGCCC
....((......))..(((((((((((..(((..(((...((.......))..))))))..))))..)))))))................... ( -22.60)
>DroSim_CAF1 106910 93 + 1
UUAAGGGACUGACCAUGGAUGAGAUCAUUGCCCAAGCCUUUGUGUUCUUCAUCGCUGGCUUCGAUACCUCGUCUUCCACCAUGGCAUUUGCCC
....(((..((.(((((((((((...((((...(((((...(((........))).)))))))))..)))))......))))))))....))) ( -25.50)
>DroEre_CAF1 109113 93 + 1
UCAAAGGACUCACCAUGGAUGAGAUCGUUGCCCAAUCUUUCGUGUUCUUCAUUGCUGGCUUCGAUACCUCAUCCUCCACAAUGGGAUUCGCCC
......((.((.(((((((((((((((..(((((((..............))))..)))..))))..)))))))......)))))).)).... ( -22.54)
>DroYak_CAF1 113085 93 + 1
UUAAAGGACUAACCCUGGAUGAGGUAGUUGCCCAAGCUUUUGUGUUCUUCAUUGCUGGCUUCGAUACCUCAUCCUCCACAAUGGGAUUCGCGC
....(((......)))((((((((((...(((..(((....(((.....))).)))))).....))))))))))(((......)))....... ( -28.80)
>consensus
UUAAGGGACUAACCAUGGAUGAGAUCGUUGCCCAAGCUUUUGUGUUCUUCAUCGCUGGCUUCGAUACCUCAUCCUCCACCAUGGGAUUUGCCC
....(((.....(((((((((((((((..(((..(((....(((.....))).))))))..))))..)))))))......))))......))) (-18.60 = -19.56 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:09 2006