Locus 8722

Sequence ID 3R_DroMel_CAF1
Location 23,303,189 – 23,303,294
Length 105
Max. P 0.926258
window14007

overview

Window 7

Location 23,303,189 – 23,303,294
Length 105
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 72.81
Mean single sequence MFE -23.60
Consensus MFE -8.98
Energy contribution -10.45
Covariance contribution 1.46
Combinations/Pair 1.20
Mean z-score -2.29
Structure conservation index 0.38
SVM decision value 1.17
SVM RNA-class probability 0.926258
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23303189 105 - 27905053
CACAUUUAUAUUGACUACUGGCAUCGAACAAAGGGCUUU-------UUGCUC--GGAAAUAGCAUUUUGCCCCUAUUCCCAUUCC----CACU-CGAUGCAUGCAAACUUAUUUGCGCC
....................(((((((.....((((...-------..))))--((.(((((..........))))).)).....----...)-))))))..(((((....)))))... ( -23.90)
>DroSec_CAF1 100593 113 - 1
CACAUUAAUAUUGACUACUGGCAUCGAACAAAGGGCUUUUUGCUUUUUGCUC--GGAAAUAGCAUUUUGCCCCUAUUCCCAUUCC----CACUCCGAUGCAUGCAAACUUAUUUGCGCC
....................(((((((.((((((((.....)))))))).))--((.(((((..........))))).)).....----......)))))..(((((....)))))... ( -25.60)
>DroSim_CAF1 104441 113 - 1
CACAUUAAUAUUGACUACUGGCAUCGAACAAAGGGCUUUUUGCUUUUUGCUC--GGAAAUAGCAUUUUGCCCCUAUUCCCAUUCC----CACUCCGAUGCAUGCAAACUUAUUUGCGCC
....................(((((((.((((((((.....)))))))).))--((.(((((..........))))).)).....----......)))))..(((((....)))))... ( -25.60)
>DroEre_CAF1 107044 97 - 1
CACAUUUAUAUUGACUGCUGGCAUCGAACAAAGGGCUUU--------UGCCCAGGGAAAAAGGA---------AAUUCCCAUUCC----CACG-CGAUGCAUGCAAACUUAUUUGCAUC
....................((((((......((((...--------.)))).(((((...((.---------....))..))))----)...-))))))(((((((....))))))). ( -31.60)
>DroYak_CAF1 110991 93 - 1
CACAUUAAUAUUGACUGUUGGCAUCGAACAAAGGGCUUU-------UUGCUC---------GGA---------AAUUUCCCUACCCAUCCACU-CGAUGCAUGCUAACUUAUUUGCACU
....................(((((((.....((((...-------..))))---------(((---------....)))............)-)))))).(((..........))).. ( -19.40)
>DroAna_CAF1 97585 88 - 1
CACAUAAAUAUUGGCUACUGCCAUCGAACAAUGCGGUUU-------UUUCC----------------------AA-UUCUGUACUUCUGUAUU-UGAUUCAUGAAAACUUAUUUACGCC
....((((((.((((....))))...........(((((-------((...----------------------((-((..((((....)))).-.))))...))))))))))))).... ( -15.50)
>consensus
CACAUUAAUAUUGACUACUGGCAUCGAACAAAGGGCUUU_______UUGCUC__GGAAAUAGCA_________AAUUCCCAUUCC____CACU_CGAUGCAUGCAAACUUAUUUGCGCC
....................((((((......((((............))))..((((.................))))...............)))))).((((((....)))))).. ( -8.98 = -10.45 +   1.46)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:06 2006