Locus 8720

Sequence ID 3R_DroMel_CAF1
Location 23,302,504 – 23,302,597
Length 93
Max. P 0.679253
window14003

overview

Window 3

Location 23,302,504 – 23,302,597
Length 93
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 81.49
Mean single sequence MFE -15.90
Consensus MFE -10.77
Energy contribution -11.47
Covariance contribution 0.70
Combinations/Pair 1.05
Mean z-score -1.69
Structure conservation index 0.68
SVM decision value 0.30
SVM RNA-class probability 0.679253
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23302504 93 - 27905053
UAAAAAUGAAUCAUUUGACUUUUUCUUAUUAAAUAAUUUAUAAGAAUUAGUUGAGAUUUGCAUUUU---------UUUUUGCCAGCCAGCUAGCAGCUUCGG
.(((((((.....((..(((..(((((((..........)))))))..)))..)).....))))))---------)..((((.((....)).))))...... ( -18.60)
>DroGri_CAF1 112808 83 - 1
UAAAAAUGAAUCAUUUGACUUUUUCAUAUUUAAUAAUUUAUAAGAAUUAGCAGAGAUUUGCAUUUU---------UU-UCGCC-----CUCUCCACGC----
.(((((((.(((.((((.((..(((.(((..........))).)))..)))))))))...))))))---------).-.....-----..........---- (  -9.90)
>DroSec_CAF1 99923 92 - 1
UAAAAAUGAAUCAUUUGACUUUUUCUUAUUAAAUAAUUUAUAAGAAUUAGUUGAGAUUUGCAUUUU----------UUUUGCCAGCCAGCUAGCAGCUUCGG
.(((((((.....((..(((..(((((((..........)))))))..)))..)).....))))))----------).((((.((....)).))))...... ( -18.60)
>DroSim_CAF1 103778 91 - 1
UAAAAAUGAAUCAUUUGACUUUUUCUUAUUAAAUAAUUUAUAAGAAUUAGUUGAGAUUUGCAUUUU-----------UUUGCCAGCCAGCUAGCAGCUUCGG
.(((((((.....((..(((..(((((((..........)))))))..)))..)).....))))))-----------)((((.((....)).))))...... ( -18.60)
>DroEre_CAF1 106341 96 - 1
UAAGAAUGAAUCAUUUGACUUUUUCUUAUUAAAUAAUUUAUAAGAAUUAGUUGAGAUUUGCAUUUUUUCCUUUUUUUUUUGCCAGCCAGCUAGUU------G
.(((((((.....((..(((..(((((((..........)))))))..)))..)).....)))))))...............((((......)))------) ( -15.70)
>DroMoj_CAF1 114019 89 - 1
UAAAAAUGAAUCAUUUGACUUUUUCUUAUUCAAUAAUUUAUAAGAAUUAGCAGAGAUUUGCAUUUU---------UUCUCGCCA----CUCUCCACUUUCUA
.(((((((.(((.((((.((..(((((((..........)))))))..)))))))))...))))))---------)........----.............. ( -14.00)
>consensus
UAAAAAUGAAUCAUUUGACUUUUUCUUAUUAAAUAAUUUAUAAGAAUUAGUUGAGAUUUGCAUUUU_________UUUUUGCCAGCCAGCUAGCAGCUUCGG
..((((((.....(((((((..(((((((..........)))))))..))))))).....)))))).................................... (-10.77 = -11.47 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:02 2006