| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,299,724 – 23,299,832 |
| Length | 108 |
| Max. P | 0.539745 |
| Location | 23,299,724 – 23,299,832 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 81.29 |
| Mean single sequence MFE | -29.93 |
| Consensus MFE | -20.07 |
| Energy contribution | -20.72 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.539745 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23299724 108 + 27905053 AGCCGACGGCUGGCCUUUACAGUUUGAGUGUUUUUCUGCAGCUUAAAGGUCGCCGCACUUAAGGCCUGAUUAGCAGCAUAAUUGCUUUUGGCUAAUUUGAUU-GAAG-GA .(((..((((.((((((((.((((.(((.....)))...)))))))))))))))).......)))(.(((((((((((....))))....))))))).)...-....-.. ( -31.60) >DroSec_CAF1 97180 96 + 1 AACCGACGGCU------------UUGAGUGUUUUUCUGCAGCUUAAAGGUCGCCGCACUUGAGGCCUGAUUAGCUGCAUAAUUGCUUUUGGCUAAUUUGAUU-GAAG-GA ..((..(((((------------(..(((((......((.(((....))).)).)))))..))))).(((((((((((....)))....)))))))).....-)..)-). ( -30.30) >DroSim_CAF1 101038 96 + 1 AGCCGACGGCU------------UUGAGUGUUUUUCUGCAGCUUAAAGGUCGCCGCACUUGAGGCCUGAUUAGCUGCAUAAUUGCUUUUGGCUAAUUUGAUU-GAAG-GA ..((..(((((------------(..(((((......((.(((....))).)).)))))..))))).(((((((((((....)))....)))))))).....-)..)-). ( -30.00) >DroEre_CAF1 103576 108 + 1 AGCCGACGGCUGGCCCUAACAAUUUGGGUGUUUUUCUGCAGCUUAAAGGUCGCCGCACUCAUGGCCUGAUUAGCUGCAUAAUUGCUUUUGGCUAAUUUGAUU-GAGU-GA ((((((.(((..((((.........)))).......(((((((...((((((.........))))))....))))))).....))).)))))).........-....-.. ( -35.00) >DroYak_CAF1 106456 109 + 1 AGCCGACGGCUGGCCUUUGCAAUUCGAGUGUUUUUCUGCAGCUUAAAGGUCGCCGCACUUAAGGUCUGAUUAGCUGCCUAAUUGCUUUUGGCUAAUUUGAUU-GAACGGA ..(((.((((.(((((((.......((((((......))).)))))))))))))).......((((.((((((((((......))....)))))))).))))-...))). ( -30.61) >DroAna_CAF1 94017 99 + 1 -CCCGUCCCCUGUG--ACGCAUUUUGAGUGUUUUUC---AGCUUAAAGGCUGCCACACUUAAAGCUUGAUUAG----AUAAUUGCGUUUUCCUAAUUUGAUUUGUCG-GA -.(((.(......(--(((((((((((((((....(---((((....)))))..))))))))))((.....))----.....))))))...(......)....).))-). ( -22.10) >consensus AGCCGACGGCUGGC__U__CA_UUUGAGUGUUUUUCUGCAGCUUAAAGGUCGCCGCACUUAAGGCCUGAUUAGCUGCAUAAUUGCUUUUGGCUAAUUUGAUU_GAAG_GA ((((((.(((...............(((.....))).((((((...(((((...........)))))....))))))......))).))))))................. (-20.07 = -20.72 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:58 2006