Locus 8713

Sequence ID 3R_DroMel_CAF1
Location 23,291,605 – 23,291,722
Length 117
Max. P 0.698855
window13993

overview

Window 3

Location 23,291,605 – 23,291,722
Length 117
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 75.50
Mean single sequence MFE -33.32
Consensus MFE -14.91
Energy contribution -15.67
Covariance contribution 0.75
Combinations/Pair 1.30
Mean z-score -2.00
Structure conservation index 0.45
SVM decision value 0.35
SVM RNA-class probability 0.698855
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23291605 117 - 27905053
CAAAUGAAUAGUUUAAUGGAUGGCUUUCGAAGGGCUCGGCGGUUGUUAAGGAGUACGGAAAUUCCAUAUAGCACCCAUAGAUGCCUGAUAAUGAAGGUCAUCGACAUUAUUAGAACA
..........(((((((((((((((((((..((((((...((.(((((.(((((......)))))...))))).))...)).)))).....)))))))))))..))))....)))). ( -32.70)
>DroSec_CAF1 89196 117 - 1
CAAAUGAAUAGUUUGAUGGAUGGCUUUCGGAGUGCUCGGCGGUUGUUAAGGAGUACGGAAAUUACAUAUAGCACCCAUAGGUGCCUAAUAAUAAAGGUCAUCCACAUUAUUAGGACA
(((((.....))))).(((((((((((....((((((.............))))))..............(((((....))))).........)))))))))))............. ( -30.12)
>DroSim_CAF1 92323 117 - 1
CAAAUGAAUAGUUUGAUGGAUGGCUUUCGGAGUGCUCGGCGGUUGUUAAGGAGUAUGGAAAUUCCAUAUAGCACCCAUAGGUGCCUAAUUAUGAAGGUCAUCCACAUUAUUAGGACA
(((((.....))))).((((((((((((((.(((((.(((....))).....((((((.....))))))))))))).(((....))).....))))))))))))............. ( -36.30)
>DroEre_CAF1 94622 117 - 1
CAAAUGAAUAAUUUCACGGAGGGCCUUCGCAGGGCUCUGCGGUUGUUAAGGAGUACGGAAAUUCCAUAUAGAAUCCAUAGGUGCCUGUAAAUGAAGGCCAUCAACAUUAUUGACACA
....((((....))))((.(((((((.....))))))).))..(((((((((((......)))))..............(((((((........))).)))).......)))))).. ( -32.00)
>DroYak_CAF1 91939 117 - 1
CAUAUGAAUAAUUUCAUGGAGGGCUUUCGUAGUGCUCUGCGAUUGUUAAGGAGUACGGAAAUUCCAUAGAGCAUCCAUAGGUGCUUAAUAAUGAAGGCCAUCGACAUCAUGAGCACA
..((((((....))))))((.(((((((((.(((((((...........)))))))((.....))...(((((((....)))))))....))))))))).))............... ( -35.50)
>DroAna_CAF1 85021 117 - 1
CAGACAAAAAACUUAAUCGAGGGCUUUCGGAAGGCCCGCCUAUUGUGCAGACACACCAGGGCAGUGUACAGCACGGCCAAGUGUUGGUAGGUAAAUACCAUCAAUACCAACAAACCA
..........((((..(((((....)))))..((((.((((..((((....))))...)))).(((.....)))))))))))((((((((((....))).....)))))))...... ( -33.30)
>consensus
CAAAUGAAUAAUUUAAUGGAGGGCUUUCGGAGGGCUCGGCGGUUGUUAAGGAGUACGGAAAUUCCAUAUAGCACCCAUAGGUGCCUAAUAAUGAAGGCCAUCAACAUUAUUAGAACA
..................((.((((((((....................(((((......))))).....(((((....))))).......)))))))).))............... (-14.91 = -15.67 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:53 2006