Locus 8708

Sequence ID 3R_DroMel_CAF1
Location 23,282,427 – 23,282,522
Length 95
Max. P 0.654380
window13981

overview

Window 1

Location 23,282,427 – 23,282,522
Length 95
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 74.26
Mean single sequence MFE -25.28
Consensus MFE -14.33
Energy contribution -14.65
Covariance contribution 0.32
Combinations/Pair 1.25
Mean z-score -1.52
Structure conservation index 0.57
SVM decision value 0.25
SVM RNA-class probability 0.654380
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23282427 95 - 27905053
GCAGCCCCACCGCUGCCCCAAUUCUCC-CUGAACCAGG-GGAUAUAUCUCCAGCUCCAGAUCGACGCUGGCGGUGUCGGCAAAAACGAAUGAAAAAU
...(((.((((((..((((..(((...-..)))...))-)).........((((((......)).))))))))))..)))................. ( -30.00)
>DroSec_CAF1 80126 95 - 1
GCAGCCCAACCGCUGCCCCGUUUCUCC-CUGAACCAGG-GGAUAUAUCUCCAGCUCCAGAUCGACGCUGGCGGUGUCGGCAAAAACGAAUGAAAAAU
(((((......)))))..(((((.(((-(((...))))-))..(((((.(((((((......)).))))).)))))......))))).......... ( -29.60)
>DroSim_CAF1 83237 95 - 1
GCUGCCCCACUGCUGCCCCGUUUCUCC-CUGAACCAGG-GGAUAUAUCUCCAGCUCCAGAUCGACGCUGGCGGUGUCGGCAAAAACGAAUGAAAAAU
..((((.((((((..((((..(((...-..)))...))-)).........((((((......)).))))))))))..))))................ ( -29.50)
>DroEre_CAF1 85737 74 - 1
--CA-------------------CUCC-CCAAGCCAGG-GGAUGUAUCUCCAGCUUCAGAUCGACGCCGGCGGUGUCGGCAAAAACGAAUGAAAAAU
--.(-------------------((((-((......))-))).)).........((((..(((..((((((...)))))).....))).)))).... ( -21.20)
>DroYak_CAF1 82563 76 - 1
--AG-------------------CUCCUCCAAACCAGGGGGAUAUAUCUCCAGCUACAGAUCGACGCUGGCGGUGUCGGCAAAAACGAAUGAAAAAU
--.(-------------------(((((((......)))))).(((((.(((((...........))))).)))))..))................. ( -21.60)
>DroAna_CAF1 75692 82 - 1
ACUGCCUCCAAGCUCCCCCGAUUCC--------------GACUAUAUCUCCGGCUU-GGAUCAACGCCGGCGAUGUCGGCAAAAACGAAUGAAAAAU
......((((((((.....(((...--------------......)))...)))))-))).....((((((...))))))................. ( -19.80)
>consensus
GCAGCCCCAC_GCUGCCCCG_UUCUCC_CUGAACCAGG_GGAUAUAUCUCCAGCUCCAGAUCGACGCUGGCGGUGUCGGCAAAAACGAAUGAAAAAU
........................((((((......))))))..((((.(((((((......)).))))).))))(((.......)))......... (-14.33 = -14.65 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:42 2006