Locus 8706

Sequence ID 3R_DroMel_CAF1
Location 23,270,147 – 23,270,251
Length 104
Max. P 0.991628
window13979

overview

Window 9

Location 23,270,147 – 23,270,251
Length 104
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 80.91
Mean single sequence MFE -20.91
Consensus MFE -13.26
Energy contribution -14.10
Covariance contribution 0.84
Combinations/Pair 1.07
Mean z-score -2.92
Structure conservation index 0.63
SVM decision value 2.28
SVM RNA-class probability 0.991628
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23270147 104 + 27905053
UCAAACCGUGCAACCCUGCAACCUUGCAACCUUGCUACCUCCCAGCCAGCCACCCAUCCACUCCGCCCCCUUCCUUGGUGGGCACAACAUUGUUGCUCUUUUUA
........((((....)))).....(((((((.(((.......))).))...............((((((......)).))))........)))))........ ( -22.00)
>DroSec_CAF1 68143 88 + 1
UCAAACCGUGCAAUCCGGCAACCUUGCAACCUUGCAAC----------------CACCCACUCCGCCCCCUUCCUUGGUGGGCACAACAUUGUUGCUCUUUUUA
................((((((.(((((....))))).----------------..........((((((......)).))))........))))))....... ( -21.50)
>DroSim_CAF1 68514 88 + 1
UCAAACCGUGCAACCCGGCAACCUUGCAACCUUGCAAC----------------CACCCACUCCGCCCCCUUCCUUGGUGGGCACAACAUUGUUGCUCUUUUUA
.......(.(((((..((.....(((((....))))).----------------...)).....((((((......)).))))........))))).)...... ( -22.90)
>DroEre_CAF1 71954 86 + 1
UCA-GCCGGGCAACCUUGCAACCUUGCAACCUCCCAGC----------------CACCCACUUAACCCC-CUCCUUGGUGGGCACAACAUUGUUGCUCUUUUUA
...-...(((((((.(((((....))))).........----------------..((((((.......-......)))))).........)))))))...... ( -21.12)
>DroYak_CAF1 69085 80 + 1
UCA--------AACGUGGCAACCUUGCAACCACCCAGC----------------CACCCACUCAGCCGCCUUCCUUGGUGGGCACAACAUUGUUGCUCUUUUUA
...--------...(((((.................))----------------)))........(((((......)))))(((((....)).)))........ ( -17.03)
>consensus
UCAAACCGUGCAACCCGGCAACCUUGCAACCUUGCAAC________________CACCCACUCCGCCCCCUUCCUUGGUGGGCACAACAUUGUUGCUCUUUUUA
.........(((((...(((....))).....................................((((((......)).))))........)))))........ (-13.26 = -14.10 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:40 2006