| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,264,943 – 23,265,044 |
| Length | 101 |
| Max. P | 0.602528 |
| Location | 23,264,943 – 23,265,044 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 83.62 |
| Mean single sequence MFE | -27.23 |
| Consensus MFE | -15.99 |
| Energy contribution | -17.24 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.85 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.602528 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23264943 101 - 27905053 CCUUCGGUUAAAAGCCAGCCCAUUAGUCACUCAAUCAGCUGGCAUCAAGUAUUGCU-UUAAAAGCAUUUGCAAUGCUCCCAUGCCACUUGCCUGCAUU-----------GCAU .(....)......((((((..(((........)))..)))))).........((((-.....))))..((((((((...((.......))...)))))-----------))). ( -25.10) >DroSec_CAF1 62799 101 - 1 CCUUCGGUUAAAAGCCAGCCCAUUAGCCACUCAAUCAGCUGGCAUCAAGUAUUGCU-UUAAAAGCAUUUGCAAUGCGCCCCUGCCACUUGGCUGCAUU-----------GCAU .(....)......((((((..(((........)))..)))))).........((((-.....))))..(((((((((.....(((....)))))))))-----------))). ( -28.90) >DroSim_CAF1 63119 101 - 1 CCUUCGGUUAAAAGCCAGCCCAUUAGCCACUCAAUCAGCUGGCAUCAAGUAUUGCU-UUAAAAGCAUUUGCAAUGCUCCCAUGCCACUUGGCUGCAUU-----------GCAU .(....)......((((((..(((........)))..)))))).........((((-.....))))..((((((((..(((.......)))..)))))-----------))). ( -29.40) >DroEre_CAF1 66742 97 - 1 CCUUGUGUUAAAAG----CCCAUUAGCCACUCAAUCAGCUGGCAUCAAGUAUUGCU-UUAAAAGCAUUUGCAAUGCUCCCUUGCCAGUUGCCUGCAUU-----------GCAU ..............----.......((....((..(((((((((...((((((((.-............))))))))....)))))))))..))....-----------)).. ( -26.42) >DroYak_CAF1 63191 108 - 1 UCCUGGGUUAAAAG----CCCAUUAGCCACUCAAUCAGCUGGCAUCGAGUAUUGCU-UUAAAAGCAUUUGCAAUGCUCCCAUGCCACUUGGCUGCAUUGCACUUGUAUUGCAU ...(((((.....)----))))..(((((.......((.((((((.(((((((((.-............)))))))))..)))))))))))))(((.(((....))).))).. ( -37.73) >DroAna_CAF1 57713 86 - 1 --UUAGGUUAAAAG----CCCAUUUGCCACUCAAUCAGCCGGCAUUAAGUAUUGUUUUUAAAAGCAUUUGCAAUGCCCCAUUGUC----------GUU-----------GCAU --...(((.....)----))....(((.((.((((.....((((((..(((.(((((....)))))..)))))))))..))))..----------)).-----------))). ( -15.80) >consensus CCUUCGGUUAAAAG____CCCAUUAGCCACUCAAUCAGCUGGCAUCAAGUAUUGCU_UUAAAAGCAUUUGCAAUGCUCCCAUGCCACUUGGCUGCAUU___________GCAU .....((((((...........))))))...((..(((.(((((...((((((((..............))))))))....))))).)))..))................... (-15.99 = -17.24 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:39 2006