Locus 8704

Sequence ID 3R_DroMel_CAF1
Location 23,260,961 – 23,261,052
Length 91
Max. P 0.745186
window13977

overview

Window 7

Location 23,260,961 – 23,261,052
Length 91
Sequences 4
Columns 92
Reading direction forward
Mean pairwise identity 85.50
Mean single sequence MFE -22.90
Consensus MFE -13.44
Energy contribution -14.00
Covariance contribution 0.56
Combinations/Pair 1.17
Mean z-score -2.73
Structure conservation index 0.59
SVM decision value 0.46
SVM RNA-class probability 0.745186
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23260961 91 + 27905053
UUUUGAGUUCGCUUUAUACCAUAUAUGUACAUACA-UAUGUAUAUGCUCUGGGCUUCUAUUUGCUUUAAUGAAGCCGAACUCUCUGGACAGG
....(((((((((((((.(((..(((((((((...-.)))))))))...)))((........))....)))))).))))))).......... ( -26.10)
>DroSec_CAF1 58902 85 + 1
UUUUGAGUUCGCUCUAUGCCAUAUAC-----CAUA-UAUGUAUAUGCUCUGGACUUCUAUUUGCUUUAAUGGAG-CGAACUCCCUGGACAGG
....(((((((((((((((.((((((-----....-...))))))))..(((....))).........))))))-)))))))(((....))) ( -27.10)
>DroSim_CAF1 59186 85 + 1
UUUUGAGUUCGCUUUAUACCAUUUAC-----CAUA-UAUGUAUAAGCUCUGGACUUCUAUUUGCUUUAAUGGAG-CGAACUCUCUGGACAGG
....(((((((((((((......(((-----....-...))).((((..(((....)))...))))..))))))-))))))).......... ( -21.10)
>DroYak_CAF1 59012 84 + 1
UUUUCAGUUCGCUUUAUACCAUAUAC-----CAUAUAGUAUAUAUGCACUGGAUUUCUAUUUGCUUUAAUGGAG-CAAACU--CUGGACAGG
..((((((..((..(((((.((((..-----.)))).)))))...))))))))..(((((((((((.....)))-))))..--.)))).... ( -17.30)
>consensus
UUUUGAGUUCGCUUUAUACCAUAUAC_____CAUA_UAUGUAUAUGCUCUGGACUUCUAUUUGCUUUAAUGGAG_CGAACUCUCUGGACAGG
....(((((((((((((...((((((...........))))))..((..(((....)))...))....)))))).))))))).......... (-13.44 = -14.00 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:38 2006