Locus 8702

Sequence ID 3R_DroMel_CAF1
Location 23,245,002 – 23,245,104
Length 102
Max. P 0.659307
window13973

overview

Window 3

Location 23,245,002 – 23,245,104
Length 102
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 79.03
Mean single sequence MFE -29.93
Consensus MFE -18.86
Energy contribution -21.00
Covariance contribution 2.14
Combinations/Pair 1.25
Mean z-score -1.52
Structure conservation index 0.63
SVM decision value 0.26
SVM RNA-class probability 0.659307
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23245002 102 + 27905053
UGGAAUCAAGGAUAAGACCCAUAAGACUGACUCAUAAAGGAGUCGGAGCUUUCGAAGGAUUCGAGGGGAGUACACUCCUCGAAAUUGGUUGUUUUAUGUGGC
.................((((((((((((((((......)))))))((((.((....))(((((((((......)))))))))...)))).))))))).)). ( -32.40)
>DroSec_CAF1 42709 98 + 1
UGGAAUCGAGGA----GCCCAUAAGACUGACUCACAAAGGAGUCGGAGCAAUCGGAGGAUUCGAGGGGAGCACACUCCUCAAAAUUGGUUGUUUUAUGUGGC
............----(((((((((((((((((......))))))((.((((((((...)))))((((((....))))))....))).)))))))))).))) ( -31.90)
>DroSim_CAF1 42598 98 + 1
UGGAAUCGAGGA----GCGCAUAAGACUGACUCACAAAGGAGUCGGAGCAAUCGGAGGAUUCGAGGGGAGUAGACUCCUCGAAAUUGGUUGUUUUAUGUGGC
............----.(((((((..(((((((......)))))))(((((((((....(((((((((......))))))))).)))))))))))))))).. ( -35.90)
>DroEre_CAF1 47464 98 + 1
UGGAGUCAAGGA----GUCCAUGAGGCUGACUCACAAAUGAGCGGGAGUUUUCGGAGGACUCGAGGGGAGUACACUCCUCGAAAUUGGCUGUUUUAUGUGGC
...((((((.((----((((.((((.....))))(....((((....))))...).))))))..((((((....))))))....))))))............ ( -32.90)
>DroYak_CAF1 42356 98 + 1
UGGCAACAAGGA----GCCCACAAGACUGACUCACAAAGGAGUCGGCGUAUUCGAAGGACUCGAGGGGAGUACACUUCUCGAAAUUGGUUGUUUUAUGUGGC
((....))....----..(((((.(.(((((((......))))))))......(((.(((((((((((......)))))))).....))).)))..))))). ( -28.80)
>DroAna_CAF1 36764 97 + 1
UCGAUUUCUGGA-AUGGCCCAGCUCAACAUCUCAAAAAGAAUUAAGGGGAAUCAGAAGG---GA-GGGUACGCACUCCUCGAAAUUGGUUGUUUUAUGUGGC
(((((((((((.-....(((.........(((.....)))......)))..)))))))(---((-(........)))))))).....((..(.....)..)) ( -17.66)
>consensus
UGGAAUCAAGGA____GCCCAUAAGACUGACUCACAAAGGAGUCGGAGCAAUCGGAGGAUUCGAGGGGAGUACACUCCUCGAAAUUGGUUGUUUUAUGUGGC
................(((((((((((((((((......)))))))......(((.....((((((((......))))))))......)))))))))).))) (-18.86 = -21.00 +   2.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:35 2006