Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 23,241,168 – 23,241,265 |
Length | 97 |
Max. P | 0.990271 |
Location | 23,241,168 – 23,241,265 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 83.30 |
Mean single sequence MFE | -23.17 |
Consensus MFE | -15.44 |
Energy contribution | -15.25 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.06 |
Mean z-score | -3.18 |
Structure conservation index | 0.67 |
SVM decision value | 2.20 |
SVM RNA-class probability | 0.990271 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23241168 97 + 27905053 UCUCCACCUCUGCAUCCACAUCCAUAUGCGCCACCUCCCUGUCCCCUCCCAAGCAAUCCCCAGCCAUUGGGAGCACUCCACAUGGUGGGGCAUCCAU .........................((((.(((((..........(((((((((........))..)))))))..........))))).)))).... ( -26.55) >DroSec_CAF1 38858 94 + 1 GC--CACCUCUGCAUCCACAUCCAUAUGCGCCACCUCCCUGCCCCCUCCAAUCCAUUCCCCAGCCAUUGG-UGCACUCCACAUGGUGGGGCAUCCAU ..--.......((((..........))))..........((((((.................((((((((-......))).)))))))))))..... ( -19.02) >DroSim_CAF1 38749 92 + 1 GCUCCACCUCUGCAUCCACAUCCAUAUGCGCC----CCCUACCCGCUCCAAUCCAUUCCCCAGCCAUUGG-UGCACUCCACAUGGUGGGGCAUCCAU ((((((((...((((..........))))...----........((.(((((.............)))))-.)).........))))))))...... ( -24.42) >DroYak_CAF1 37041 83 + 1 UCUCCACCUCUGCAUCCACAUCCAUAUGCGGA----UC-----CAC----AUCCAAUCCCCUGCCAUUGG-AGCACUUCACAUGGUGGGGCAUCCAU .((((((((((((((..........)))))))----..-----...----.((((((........)))))-)...........)))))))....... ( -22.70) >consensus GCUCCACCUCUGCAUCCACAUCCAUAUGCGCC____CCCUGCCCCCUCCAAUCCAAUCCCCAGCCAUUGG_AGCACUCCACAUGGUGGGGCAUCCAU ...........((((..........))))............................((((.((((((((.......))).)))))))))....... (-15.44 = -15.25 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:31 2006