Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,929,426 – 2,929,527 |
Length | 101 |
Max. P | 0.641057 |
Location | 2,929,426 – 2,929,527 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 75.48 |
Mean single sequence MFE | -20.63 |
Consensus MFE | -11.83 |
Energy contribution | -11.58 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.12 |
Mean z-score | -1.53 |
Structure conservation index | 0.57 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.641057 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2929426 101 - 27905053 UUUCCUAUUGGGAAAACCACCCAUCAGGUGGCAACGCCGUUCGUUCAUGGGCUUUUCUUUAUUGUCUCUU-UUUGUCUACGUGACC--AAACUUCAUUGCAUGU (((((.....)))))......(((((((((....))))(((.(.((((((((..................-...)))..))))).)--.))).....)).))). ( -18.70) >DroPse_CAF1 9313 84 - 1 AUUCCUAUUGGAACAAAUG-UCAUCAGGUGGCAACGCCAU----UCAUAG--------------UUU-UUGUUGGCCUACGUGACCGAAAACUACAUUGUAAAU .((((....))))..((((-......((((....))))..----...(((--------------(((-(((.(.((....)).).)))))))))))))...... ( -21.20) >DroSim_CAF1 8208 102 - 1 UUUCCUAUUGGGAAAACCACCCAUCAGGUGGCAACGCCGUUCGUUCAUAGGCUUUUCUUUUUUGUCUCUUUUUUGUCUACGUGACG--AAACUUCAUUGCAUUU ...(((((((((.......))))...((((....))))........)))))...................(((((((.....))))--)))............. ( -21.90) >DroEre_CAF1 9674 98 - 1 UUUCCUAUUGGGAAAACCAUCCAUCAGGUGGCAACGCCGU----UCAUAGGCUUUUCUUUUUUGUCUCUUUUUGGUCUACGUGACC--AAACUUCAUUGCAUGU ...((((((((.....))).......((((....))))..----..)))))...................(((((((.....))))--)))............. ( -22.90) >DroYak_CAF1 9474 87 - 1 UUUCCUAUUGGAAAAACCAUCCAUCAGGUGGCAACGCCGU----UCAUAGGCUUUUCUUUUUUGU-----------CUACGUGACC--AAACUUCAUUGCAUGU (((((....)))))...(((.((...((((....))))(.----((((((((...........))-----------))..)))).)--.........)).))). ( -17.90) >DroPer_CAF1 9373 84 - 1 AUUCCUAUUGGAACAAAUG-UCAUCAGGUGGCAACGCCAU----UCAUAG--------------UUU-UUGUUGGCCUACGUGACCGAAAACUACAUUGUAAAU .((((....))))..((((-......((((....))))..----...(((--------------(((-(((.(.((....)).).)))))))))))))...... ( -21.20) >consensus UUUCCUAUUGGAAAAACCA_CCAUCAGGUGGCAACGCCGU____UCAUAGGCUUUUCUUUUUUGUCU_UU_UUGGUCUACGUGACC__AAACUUCAUUGCAUGU .((((....)))).............((((....)))).................................................................. (-11.83 = -11.58 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:13 2006