Locus 870

Sequence ID 3R_DroMel_CAF1
Location 2,929,426 – 2,929,527
Length 101
Max. P 0.641057
window1383

overview

Window 3

Location 2,929,426 – 2,929,527
Length 101
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 75.48
Mean single sequence MFE -20.63
Consensus MFE -11.83
Energy contribution -11.58
Covariance contribution -0.25
Combinations/Pair 1.12
Mean z-score -1.53
Structure conservation index 0.57
SVM decision value 0.22
SVM RNA-class probability 0.641057
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2929426 101 - 27905053
UUUCCUAUUGGGAAAACCACCCAUCAGGUGGCAACGCCGUUCGUUCAUGGGCUUUUCUUUAUUGUCUCUU-UUUGUCUACGUGACC--AAACUUCAUUGCAUGU
(((((.....)))))......(((((((((....))))(((.(.((((((((..................-...)))..))))).)--.))).....)).))). ( -18.70)
>DroPse_CAF1 9313 84 - 1
AUUCCUAUUGGAACAAAUG-UCAUCAGGUGGCAACGCCAU----UCAUAG--------------UUU-UUGUUGGCCUACGUGACCGAAAACUACAUUGUAAAU
.((((....))))..((((-......((((....))))..----...(((--------------(((-(((.(.((....)).).)))))))))))))...... ( -21.20)
>DroSim_CAF1 8208 102 - 1
UUUCCUAUUGGGAAAACCACCCAUCAGGUGGCAACGCCGUUCGUUCAUAGGCUUUUCUUUUUUGUCUCUUUUUUGUCUACGUGACG--AAACUUCAUUGCAUUU
...(((((((((.......))))...((((....))))........)))))...................(((((((.....))))--)))............. ( -21.90)
>DroEre_CAF1 9674 98 - 1
UUUCCUAUUGGGAAAACCAUCCAUCAGGUGGCAACGCCGU----UCAUAGGCUUUUCUUUUUUGUCUCUUUUUGGUCUACGUGACC--AAACUUCAUUGCAUGU
...((((((((.....))).......((((....))))..----..)))))...................(((((((.....))))--)))............. ( -22.90)
>DroYak_CAF1 9474 87 - 1
UUUCCUAUUGGAAAAACCAUCCAUCAGGUGGCAACGCCGU----UCAUAGGCUUUUCUUUUUUGU-----------CUACGUGACC--AAACUUCAUUGCAUGU
(((((....)))))...(((.((...((((....))))(.----((((((((...........))-----------))..)))).)--.........)).))). ( -17.90)
>DroPer_CAF1 9373 84 - 1
AUUCCUAUUGGAACAAAUG-UCAUCAGGUGGCAACGCCAU----UCAUAG--------------UUU-UUGUUGGCCUACGUGACCGAAAACUACAUUGUAAAU
.((((....))))..((((-......((((....))))..----...(((--------------(((-(((.(.((....)).).)))))))))))))...... ( -21.20)
>consensus
UUUCCUAUUGGAAAAACCA_CCAUCAGGUGGCAACGCCGU____UCAUAGGCUUUUCUUUUUUGUCU_UU_UUGGUCUACGUGACC__AAACUUCAUUGCAUGU
.((((....)))).............((((....)))).................................................................. (-11.83 = -11.58 +  -0.25) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:13 2006