Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 529,506 – 529,604 |
Length | 98 |
Max. P | 0.500000 |
Location | 529,506 – 529,604 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 78.98 |
Mean single sequence MFE | -18.38 |
Consensus MFE | -12.54 |
Energy contribution | -12.73 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.31 |
Mean z-score | -1.09 |
Structure conservation index | 0.68 |
SVM decision value | -0.08 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 529506 98 - 27905053 AAUUUUUAUUAUGCUUUUCACACUUUUUCACCUCCUCCUCACUGAUGUCCUGAAAUCCAGUUGCCGGCACUGGACCAUUCCUCACAUCGAUGCUGUCA .......................................((.((((((...(((.((((((.(....)))))))...)))...)))))).))...... ( -13.80) >DroSec_CAF1 6352 98 - 1 CAUUUUUAUUAUGCUUAUCACACUUUUUCACCUCCUCCUCACUGAUGUCCUGAAAUCCAGUGGCCGGCACUGGACCUUUCCUCACAUCGAUGCUGUCA .......................................((.((((((...(((((((((((.....)))))))..))))...)))))).))...... ( -17.80) >DroSim_CAF1 6125 98 - 1 CAUUUUUAUUAUGCUUAUCACACUUUUUCACCUCCUCCUCACUGAUGUCCUGAAAUCCAGUGGCCGGCACUGGACCUUUCCUCACAUCGAUGCUGUCA .......................................((.((((((...(((((((((((.....)))))))..))))...)))))).))...... ( -17.80) >DroEre_CAF1 7143 98 - 1 CAUUUUUAUUAUAUCUAUCGCACUUUCUCACCUCCUCCUCACUGAUGUCCUGGAAGCCAGUGGCCGGCACUGGAUUCUUUCUCACAUCGACGCUGUCG ...........................................(((((...(((((((((((.....))))))...)))))..)))))(((...))). ( -18.30) >DroYak_CAF1 6503 88 - 1 ----------GUAUCUAUCACACUUUUUCACCUCCUCCUCACUGAUGUCCUGGAAGCCAGUGGCCGGUACUGGACCCUUCCUCUCAUCAAUGCUUUCG ----------.............................((.(((((....(((((((((((.....))))))...)))))...))))).))...... ( -18.20) >DroPer_CAF1 7416 97 - 1 CCUUCCGGCAGC-GCCAUCGCAACGCUUCACAUCCGCGUCGUUAAUGUCCUGGAAGCCCGUGGCCGGCACUGGCGACUUCUUCACAUCGAUGCUAUCG .....((.(((.-(((.((((...(((((.((...((((.....))))..)))))))..))))..))).))).))....................... ( -24.40) >consensus CAUUUUUAUUAUGCCUAUCACACUUUUUCACCUCCUCCUCACUGAUGUCCUGAAAGCCAGUGGCCGGCACUGGACCCUUCCUCACAUCGAUGCUGUCA ..........................................((((((...(((.(((((((.....)))))))...)))...))))))......... (-12.54 = -12.73 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:43 2006