| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,238,610 – 23,238,706 |
| Length | 96 |
| Max. P | 0.667273 |
| Location | 23,238,610 – 23,238,706 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 81.92 |
| Mean single sequence MFE | -24.75 |
| Consensus MFE | -17.29 |
| Energy contribution | -17.15 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.667273 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23238610 96 + 27905053 UGGGGUA-UGCCAAGGG-GUAAUGAG--------------GAGUUCGGCGGGCACUCAAUCAAGUGCAAAAUGCAAAUGCGUUGAGCAGCUAAAAAUACC---AGCAACA--AAAGG ...((((-((((....)-))......--------------..(((((((..(((((......))))).....((....)))))))))........)))))---.......--..... ( -24.30) >DroSec_CAF1 36311 97 + 1 UGGGGGA-UGCCAAGGGGGAAAUGAG--------------GAGUUCGGCGGGCACUCAAUCAAGUGCAAAAUGCAAAUGCGUUGAGCAGCUAAAAAUACC---AGCAACA--AAAGG .......-(((....((.......((--------------..(((((((..(((((......))))).....((....)))))))))..)).......))---.)))...--..... ( -21.84) >DroSim_CAF1 36195 97 + 1 UGGGGGA-UGCCAAGGGGGAAAUGAG--------------GAGUUCGGCGGGCACUCAAUCAAGUGCAAAAUGCAAAUGCGUUGAGCAGCUAAAAAUACC---AGCAACA--AAAGG .......-(((....((.......((--------------..(((((((..(((((......))))).....((....)))))))))..)).......))---.)))...--..... ( -21.84) >DroEre_CAF1 41219 96 + 1 UUGGGGA-AGCCAGGGG-UUGAUGCG--------------GAGUUCGGCGGGCACUCAAUCAAGUGCAAAAUGCAAAUGCGUUGAGCGGCUAAAAAUAGC---AGCAACA--AAAGG ...((..-..)).....-(((.(((.--------------..(((((((..(((((......))))).....((....))))))))).((((....))))---.))).))--).... ( -27.50) >DroYak_CAF1 34425 116 + 1 UUGGGGAUACCCAAGGA-UGGAUGGGUGUGGGUAAUGAAAGAGUUCGGCGGGCACUCAAUCAAGUGCAAAAUGCAAAUGCGUUGAGCAGCUAAAAAUAUCAGCAGCAACAAAAAAGG (((((....))))).((-(((((((((((..((...(((....))).))..)))))).))).(((((..(((((....)))))..))).)).....))))................. ( -28.70) >DroAna_CAF1 30840 80 + 1 -----------CAGG------AUG-G--------------GAGCUCGGCGAGCACUCAAUCAAGUGCAAAAUGCAAAUGCGUUGAGCUGCUAAAAAUACC---AGAAACA--AAAGG -----------....------.((-(--------------.((((((((..(((((......))))).....((....)))))))))).)))........---.......--..... ( -24.30) >consensus UGGGGGA_UGCCAAGGG_GAAAUGAG______________GAGUUCGGCGGGCACUCAAUCAAGUGCAAAAUGCAAAUGCGUUGAGCAGCUAAAAAUACC___AGCAACA__AAAGG ..........................................(((((((..(((((......))))).....((....))))))))).............................. (-17.29 = -17.15 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:30 2006