Locus 8698

Sequence ID 3R_DroMel_CAF1
Location 23,235,910 – 23,236,002
Length 92
Max. P 0.874698
window13966

overview

Window 6

Location 23,235,910 – 23,236,002
Length 92
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 77.34
Mean single sequence MFE -22.12
Consensus MFE -15.68
Energy contribution -16.77
Covariance contribution 1.09
Combinations/Pair 1.18
Mean z-score -1.49
Structure conservation index 0.71
SVM decision value 0.89
SVM RNA-class probability 0.874698
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23235910 92 - 27905053
UUCCAAACUGGCUCCUUGGGCGUGGCCAUAAAGAAGGGAGCUCACAUGGAGAAAAUAUUACUGAAAAAAUGGUCAUCUAUAAGCAGAGAAAA-
(((((....((((((((.(((...))).......))))))))....))))).........(((.....((((....))))...)))......- ( -21.20)
>DroSec_CAF1 33665 92 - 1
UUCCAAACUGGCUCCUUGGGCGUGGCCAUAAACCAGGGAGCUCACAUGGAGAAAAUAUCACUGGAAAAAUGGUCAUCUAUUCACAGAGAAAA-
(((((....((((((((((.............))))))))))....)))))......((.(((....(((((....)))))..))).))...- ( -27.22)
>DroSim_CAF1 33574 92 - 1
UUCCAAACUGGCUCCUUGGGCGUGGCCAUAAACCAGGGAGCUCACAUGGAGAAAAUAUUACUGGAAAAAUGGUCAUCUAUUCACAGAGAAAA-
(((((....((((((((((.............))))))))))....))))).........(((....(((((....)))))..)))......- ( -26.22)
>DroEre_CAF1 38644 93 - 1
UUCCAAACAGGCUGCUUGGGCGUGGUCAUAAACCAGGCAGCUCACAUGGAGAAAAAAGUACAGAGAAAUUGGUCAGCUAUCAGCCGGGAAAAA
(((((....((((((((((.............))))))))))....))))).................(((((.........)))))...... ( -23.92)
>DroYak_CAF1 31600 88 - 1
UUCCCAACUGGCUCCUUGGGCGUGGUCAUAAACCAGGCAGCUCACAUGGAGAAAAUAUUACAGAGAAAUUGGUCAUCUAUCUGCAGAA-----
.......(((.((((.(((((...(((........))).)))))...)))).........((((...............)))))))..----- ( -19.26)
>DroAna_CAF1 27985 75 - 1
UUCCGAGACGGCUCCUUGGGCGUGGACAUAAACCAGAAUCUACACUUGGAGAAAAUUGUAUAGA--AUCUGCUCAA--------A--------
(((((((...(((.....)))(((((............))))).)))))))....(((..(((.--..)))..)))--------.-------- ( -14.90)
>consensus
UUCCAAACUGGCUCCUUGGGCGUGGCCAUAAACCAGGGAGCUCACAUGGAGAAAAUAUUACAGAAAAAAUGGUCAUCUAUCAGCAGAGAAAA_
(((((....((((((((((...((....))..))))))))))....))))).......................................... (-15.68 = -16.77 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:29 2006