| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,235,083 – 23,235,181 |
| Length | 98 |
| Max. P | 0.780594 |
| Location | 23,235,083 – 23,235,181 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 78.66 |
| Mean single sequence MFE | -22.15 |
| Consensus MFE | -17.29 |
| Energy contribution | -16.77 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.780594 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23235083 98 + 27905053 UACUGCUGUGCAUUGAUUGCUAAUGAGCAGGGGCAUUAGAUGAUUUAGUGCCACUCAACCCAGGAUCCCCU------CGAUCCUCUCUAUCCCGCCGA-UAAACC ..(((((..(((.....))).....))))).(((((((((...))))))))).........((((((....------.))))))...((((.....))-)).... ( -25.30) >DroSec_CAF1 32833 97 + 1 UACUGCUGUGCAUUGAUUGCUAAUGAGCAGGGGCAUUAGAUGAUUUAGUGCCACUCAAACCAGGAUCCCCU------CGAUCCUCUCUAUCCCCCC-A-UACACC ..(((((..(((.....))).....))))).(((((((((...))))))))).........((((((....------.))))))............-.-...... ( -24.80) >DroSim_CAF1 32742 97 + 1 UACUGCUGUGCAUUGAUUGCUAAUGAGCAGGGGCAUUAGAUGAUUUAGUGCCACUCAACCCAGGAUCCCCU------CGAUCCUCUCUAUCCCCCC-G-UACACU ......(((((......((((....))))(((((((((((...))))))))).........((((((....------.))))))..........))-)-)))).. ( -26.60) >DroEre_CAF1 37825 104 + 1 UACUGCUGUGCAUUGAUUGCUAAUGAGCAGGGGCAUUAGAUGAUUUAGUGCCACUCAACCCAUGAUCCCCCCAUCCCCCAUCCCCACUAUCCCCCCUA-UACACA ..(((((..(((.....))).....))))).(((((((((...)))))))))..............................................-...... ( -18.30) >DroYak_CAF1 30884 90 + 1 UACUGCUGUGCAUUGAUUGCUAAUGAGCAGGGGCAUUAGAUGAUUUAGUGCCACUCAACCCAUGAUC---------------CCCACUAUCCCCCUUGCCACACC ......(((((((((.....))))).((((((((((((((...)))))))))..(((.....)))..---------------............))))))))).. ( -19.00) >DroPer_CAF1 34086 77 + 1 UGUUUCUGUGCAUUGAUUGCUAAUGAGAGUGAGCAUUAGAUGAUUUAGUGCUG-----UCCCGGAGCCC--------------------UCCUCCU-G-CUCAC- ....((...(((.....)))....))((((.(((((((((...))))))))).-----....((((...--------------------..)))).-)-)))..- ( -18.90) >consensus UACUGCUGUGCAUUGAUUGCUAAUGAGCAGGGGCAUUAGAUGAUUUAGUGCCACUCAACCCAGGAUCCCCU______CGAUCCUCUCUAUCCCCCC_A_UACACC ..(((((..(((.....))).....))))).(((((((((...)))))))))..................................................... (-17.29 = -16.77 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:28 2006