Locus 8696

Sequence ID 3R_DroMel_CAF1
Location 23,232,374 – 23,232,469
Length 95
Max. P 0.582050
window13964

overview

Window 4

Location 23,232,374 – 23,232,469
Length 95
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 83.08
Mean single sequence MFE -31.86
Consensus MFE -25.83
Energy contribution -26.05
Covariance contribution 0.22
Combinations/Pair 1.09
Mean z-score -1.46
Structure conservation index 0.81
SVM decision value 0.10
SVM RNA-class probability 0.582050
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23232374 95 - 27905053
CUGCGCCUCGGCUC--UUUUCCUCUACCAAAACCUCCUCUCCAGCUGGAACU--------ACAGCAACGGCUCGUGUUGCGCAGCAUGUGUUGCAUGUUGCAGCA-----
..(((((..((...--..........))...............((((.....--------.))))...))).........((((((((.....)))))))).)).----- ( -26.12)
>DroSec_CAF1 30064 100 - 1
CUGCGCCUCGGCUC--CUCUCCUCUUCCAAAACCUCCUCUCCAGCUGGAACU--------ACAGCAACGGCUCGUGUUGCGCAGCAUGUGUUGCAUGUUGCAGCAGCAGC
..(((((..((...--....)).....................((((.....--------.))))...)))...((((((((((((((.....)))))))).)))))))) ( -32.00)
>DroSim_CAF1 29970 102 - 1
CUGCGCCUCGGCUCUUCUCUCCUCUUCCAAAACCUCCUCUCCAGCUGGAACU--------ACAGCAACGGCUCGUGUUGCGCAGCAUGUGUUGCAUGUUGCAGCAGCAGC
..(((((..((.........)).....................((((.....--------.))))...)))...((((((((((((((.....)))))))).)))))))) ( -31.50)
>DroEre_CAF1 35182 95 - 1
CUGCGCCUCGGCU-------CCUCUUCCAAAACCUCCCCUCCAGCUGGAACU--------ACAGCAACGGCUCGUGUUGCGCAGCAUGUGUUGCAUGUUGCUGCAGGAGG
....((....)).-------.................(((((.((((.....--------.))))............(((((((((((.....)))))))).)))))))) ( -32.50)
>DroYak_CAF1 27989 95 - 1
CUGCGCCUCGGCU-------CCUCAACCGAAACCUCCUCUCCAGCUGGAACU--------ACAGCAGCGGCUCGUGUUGCGCAGCAUGUGUUGCAUGUUGCUGCAGGAGG
.......((((..-------......))))..((((((.....((((.....--------.)))).(((((.(((((.((((.....)))).)))))..))))))))))) ( -38.80)
>DroAna_CAF1 24769 92 - 1
AUGUGCCUGUGCU-------CCUCCUCAAA-------UUUCCAGCUGGAACUACACAGCUACAGCAACGGGUCGUGUUGCGCAGCAUGUGUUGCAUGUUGCAGCUG----
.((((.(((((..-------..(((.....-------.........)))....))))).))))((((((.....))))))((((((((.....)))))))).....---- ( -30.24)
>consensus
CUGCGCCUCGGCU_______CCUCUUCCAAAACCUCCUCUCCAGCUGGAACU________ACAGCAACGGCUCGUGUUGCGCAGCAUGUGUUGCAUGUUGCAGCAG_AG_
((((((....))...........................(((....)))..............((((((.....))))))((((((((.....)))))))).)))).... (-25.83 = -26.05 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:27 2006