Locus 8695

Sequence ID 3R_DroMel_CAF1
Location 23,230,818 – 23,230,908
Length 90
Max. P 0.799789
window13963

overview

Window 3

Location 23,230,818 – 23,230,908
Length 90
Sequences 4
Columns 94
Reading direction forward
Mean pairwise identity 96.74
Mean single sequence MFE -31.78
Consensus MFE -28.65
Energy contribution -28.65
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.97
Structure conservation index 0.90
SVM decision value 0.61
SVM RNA-class probability 0.799789
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23230818 90 + 27905053
UCGUUGUGGGUCAGCCA----GCCAACGAAGGCGGCCACUCUGCCGGCCUGGCAGUGAAAGUUUUCAAAUUAAAUUUUGCGACGCCAUUUUCAA
..(..(((((((.((((----(((......)))((((........)))))))).((.(((((((.......)))))))))))).))))...).. ( -29.40)
>DroSec_CAF1 28495 90 + 1
UCGUUGUGGGUCAGCCA----GCCAGCGAAGGCGGCCACUCUGCCGGCCUGGCAGUGAAAGUUUUCAAAUUAAAUUUUGCGACGCCAUUUUCAA
..(..(((((((.((((----(((.((....))(((......))))).))))).((.(((((((.......)))))))))))).))))...).. ( -31.80)
>DroSim_CAF1 28410 94 + 1
UCGUUGUGGGUCAGCCAGCCAGCCAGCGAAGGCGGCCACUCUGCCGGCCUGGCAGUGAAAGUUUUCAAAUUAAAUUUUGCGACGCCAUUUUCAA
..(..(((((((.(((((((.(((......)))(((......))))).))))).((.(((((((.......)))))))))))).))))...).. ( -32.70)
>DroEre_CAF1 33681 90 + 1
GCGUUGUGGGUCAGCCA----GCCAGCGAAGGCGGCCACUCUGCCGGCCUGGCAGUGAAAGUUUUCAAAUUAAAUUUUGCGACGCCAUUUUCAA
((((((..((...((((----(((.((....))(((......))))).)))))..((((....))))........))..))))))......... ( -33.20)
>consensus
UCGUUGUGGGUCAGCCA____GCCAGCGAAGGCGGCCACUCUGCCGGCCUGGCAGUGAAAGUUUUCAAAUUAAAUUUUGCGACGCCAUUUUCAA
..(..(((((((.((((....(((......)))((((........)))))))).((.(((((((.......)))))))))))).))))...).. (-28.65 = -28.65 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:26 2006