Locus 8694

Sequence ID 3R_DroMel_CAF1
Location 23,230,430 – 23,230,529
Length 99
Max. P 0.997843
window13962

overview

Window 2

Location 23,230,430 – 23,230,529
Length 99
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 79.29
Mean single sequence MFE -22.66
Consensus MFE -12.87
Energy contribution -13.74
Covariance contribution 0.88
Combinations/Pair 1.06
Mean z-score -3.49
Structure conservation index 0.57
SVM decision value 2.94
SVM RNA-class probability 0.997843
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23230430 99 + 27905053
UUAAUAACAAGUGUGUACACUGAUAGAAAUAACGCUUUAAAUGCGACAUUUUCAAAAGGUGUUUAAAGGUGCAUGAGCCCAUAAUACACUUGUACAAAA
......(((((((((((((((....((((...(((.......)))....))))....))))).....((.((....))))...))))))))))...... ( -26.50)
>DroSec_CAF1 28144 99 + 1
UUAAUAACAAGUGUGUGCACUGAUAGAAAAAACGCUAUAAAGUUGAUAUUUUUAAAAGGUGUUUAAAGGUGCAUGAGCCUAUAAUACACUUGUACGAAA
......(((((((((((((((..((((((.(((........)))....))))))...)))))....((((......))))...))))))))))...... ( -23.60)
>DroSim_CAF1 28059 99 + 1
UUAAUAACAAGUGUGUGCACUGAUAGAAAUAACGCUUUAAAGUAUAUAUUUUUAAAAGGUGUUUAAAGGUGCAUGAGCCAAUAAUACACUUGUACAAAA
......(((((((((((((((..((((((((..(((....)))...))))))))...))))).....(((......)))....))))))))))...... ( -24.80)
>DroYak_CAF1 25991 77 + 1
UUAAUAACAAGUGUGUGCACUGAUAAAAAUAACGUUUUAAA----------------GGUGAAUAACCA------AGCCAUUAAUACACUUGUACAUAA
......((((((((((.((((..(((((......)))))..----------------))))........------........))))))))))...... ( -15.73)
>consensus
UUAAUAACAAGUGUGUGCACUGAUAGAAAUAACGCUUUAAAGU_GAUAUUUUUAAAAGGUGUUUAAAGGUGCAUGAGCCAAUAAUACACUUGUACAAAA
......(((((((((((((((....................................))))).....(((......)))....))))))))))...... (-12.87 = -13.74 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:25 2006