Locus 8693

Sequence ID 3R_DroMel_CAF1
Location 23,215,305 – 23,215,415
Length 110
Max. P 0.951460
window13961

overview

Window 1

Location 23,215,305 – 23,215,415
Length 110
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 76.20
Mean single sequence MFE -33.82
Consensus MFE -21.42
Energy contribution -22.03
Covariance contribution 0.61
Combinations/Pair 1.17
Mean z-score -1.96
Structure conservation index 0.63
SVM decision value 1.41
SVM RNA-class probability 0.951460
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23215305 110 - 27905053
UAAUAACGCUGGCCUGCUGGGCCAGCAAUGCUGUGGGACGCCAAACGACGCCAUGUCUGGUGCACAUCCUGCCGGCAAGUAAGUGAAACUGGAAGUGGAGGAAUCCUGCC
.......(((((((.....)))))))......(..(((..((....(.(((((....))))))...(((..((((.............))))....)))))..)))..). ( -38.62)
>DroPse_CAF1 13826 85 - 1
UAAUAACGCUUGCCUGCUGGGCCAGCAAUGCGGUGGGCCGCCAGACGACGCCCUGUCUGGUGCACAUUCUCCCUGCAAGUAAGUA-------------------------
.......((((((.(((.((((((.(.....).)))((.((((((((......)))))))))).......))).))).)))))).------------------------- ( -33.60)
>DroWil_CAF1 12874 98 - 1
UAAUAACACUGGCUUGCUGGGCCAGCAAUGCGGUUGGUAGACAGACAACGCCCUGUCAGGUUCACAUACUACCAGCAAGUAAGUAUAAAAGGAAGUGC------------
.......(((.(((((((((((((((......)))))).(((((........)))))..............))))))))).)))..............------------ ( -33.00)
>DroMoj_CAF1 9936 85 - 1
UAAUAACACUGGCUUGCUGGGCCAGCAAUGCGGUGGGCCGGCAGACGGUGCCAUGUCUCGUUCACAUUCUGCCAGCAAGUAAGUA-------------------------
.......(((.(((((((((.(((.(.....).))).))((((((..(((..(((...))).)))..))))))))))))).))).------------------------- ( -33.50)
>DroAna_CAF1 7386 94 - 1
UAAUAACACUGGCCUGCUGGGCCAGCAACACCGUUGGCCGCCAGACGACGCCCUGCCUGGUGCACAUUCUGCCUGCAAGUAAGUCGAGUAAGAA----------------
........((((((....)(((((((......)))))))))))).((((..(.(((..(((.........))).))).)...))))........---------------- ( -30.60)
>DroPer_CAF1 13871 85 - 1
UAAUAACGCUUGCCUGCUGGGCCAGCAAUGCGGUGGGCCGCCAGACGACGCCCUGUCUGGUGCACAUUCUCCCUGCAAGUAAGUA-------------------------
.......((((((.(((.((((((.(.....).)))((.((((((((......)))))))))).......))).))).)))))).------------------------- ( -33.60)
>consensus
UAAUAACACUGGCCUGCUGGGCCAGCAAUGCGGUGGGCCGCCAGACGACGCCCUGUCUGGUGCACAUUCUGCCUGCAAGUAAGUA_________________________
.......(((.((.(((.(((((.((......)).)))(((((((((......))))))))).........)).))).)).))).......................... (-21.42 = -22.03 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:24 2006