Locus 869

Sequence ID 3R_DroMel_CAF1
Location 2,929,007 – 2,929,100
Length 93
Max. P 0.756849
window1382

overview

Window 2

Location 2,929,007 – 2,929,100
Length 93
Sequences 5
Columns 93
Reading direction reverse
Mean pairwise identity 81.08
Mean single sequence MFE -16.03
Consensus MFE -9.36
Energy contribution -9.96
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -2.06
Structure conservation index 0.58
SVM decision value 0.49
SVM RNA-class probability 0.756849
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2929007 93 - 27905053
GCAUAUGUCGAGGCAAAACCACAAAAGUAAAAACGGUACAACAGCAAGAACAACGUGAAAAACUCGCCCAGCAUUGCAGCAACAUUUGUUGCA
(((.((((.(.(((...(((..............))).................((.....))..)))).))))))).(((((....))))). ( -19.34)
>DroSec_CAF1 8401 93 - 1
CAAUAUGUCGAGCCAAAACCACAAAAGUACAAACGUUACAACAGCAAGAACAACGUGAAAAACUCGCCCAGCAUUGCAGCAACAUUUGUUGCA
...........................................((((.......((((.....))))......)))).(((((....))))). ( -13.32)
>DroSim_CAF1 7807 93 - 1
GCAUAUGUCGAGCCAAAACCACAAAAGUACAAACGUUACAAAAGCAAGAACAACGUGAAAAACUCGCCCAGCAUUGCAGCAACAUUUGUUGCA
(((.((((((((.......(((....((....))(((.....))).........))).....))))....))))))).(((((....))))). ( -16.50)
>DroEre_CAF1 9305 93 - 1
GCAUAUGUCGAGGCAAAACCACAAAAAUACAAAUUUUACAACAGCAAUAACAACGAGAAAAACUCGCCCAGCAUUGCAGCAACAUUUGUUGCA
(((.((((.(.(((.........(((((....))))).................(((.....))))))).))))))).(((((....))))). ( -20.40)
>DroAna_CAF1 12424 71 - 1
GCACAUGCCCCAGCCAUACC-CAACAG----------CCAACAGCCAAACCA-C-----AAA-----CCAGCAUUGCAGCAACAUUUGUUGCA
(((.((((............-......----------...............-.-----...-----...))))))).(((((....))))). ( -10.60)
>consensus
GCAUAUGUCGAGGCAAAACCACAAAAGUACAAACGUUACAACAGCAAGAACAACGUGAAAAACUCGCCCAGCAUUGCAGCAACAUUUGUUGCA
...........................................((((.......((((.....))))......)))).(((((....))))). ( -9.36 =  -9.96 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:12 2006