| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,193,313 – 23,193,408 |
| Length | 95 |
| Max. P | 0.555743 |
| Location | 23,193,313 – 23,193,408 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 80.08 |
| Mean single sequence MFE | -29.42 |
| Consensus MFE | -17.92 |
| Energy contribution | -19.17 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.555743 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23193313 95 - 27905053 CC--------ACCC---ACGUACCACCUCUUCCUGUUUGCGACACAAAUGUGACAGUCAAAAAGUGCACGCAG-UGCGCAGGCAAAGUGGAUGAAGUGGAAAACCCG ..--------....---.....((((.((.(((((((((((.(((...((((.((.(.....).))))))..)-))))))))))....))).)).))))........ ( -27.90) >DroSec_CAF1 8268 103 - 1 CCACCCAGCCACCC---ACGUACCACCUCUUCCUGUUUGCGACACAAAUGUGACAGGCAAAAAGUGCACGCAG-UGCGCAGGCAAAGUGGAUGAAGUGGAAAAUCCG ..............---.....((((.((.(((((((((((.(((...((((....(((.....))).)))))-))))))))))....))).)).))))........ ( -28.80) >DroEre_CAF1 8449 95 - 1 CCA--------CCC---ACGUACCACCUCUUCCUGUUUGCGACACAAAUGUGACAGGCAAAAAGUGCACGCAG-UGCGCAGGCAAAGUGGAUGAAGUGGAAAACCCG ...--------...---.....((((.((.(((((((((((.(((...((((....(((.....))).)))))-))))))))))....))).)).))))........ ( -28.80) >DroYak_CAF1 7992 103 - 1 CCACCCAACCACCC---ACGUGCCACCUCUUCCUGUUUGCGACACAAAUGUGACAGGCAAAAAGUGCACGCAG-UGCGCAGGCAAAGUGGAUGAAGUGGAAAACCCG ((((.((.((((..---...((((.........((((((...(((....))).))))))....((((((...)-))))).))))..)))).))..))))........ ( -31.60) >DroMoj_CAF1 9227 93 - 1 C--------CACC-CGCACCGCCAGCGGCAUCCUGUUUGUGACACAAAUGUGACAAGCAAAAAGUGCGCGCUGCCAU-----CAAAGUGGAUGGAGUGAAAGCACGG .--------...(-(((.......))))...(((((((((.(((....))).)))))))....((((.((((.((((-----(......)))))))))...)))))) ( -34.30) >DroAna_CAF1 6828 93 - 1 CCGCCCAAC--------ACCCACCGCCUCUUCCUGUUUGUGACACAAAUGUGACAGGCAAAAAGUGCACGCAG-CGC-----CAAAGUGGAUGAAGUGGAAAACUCG .........--------.....((((.((.((((((((((.(((....))).)))))))....((((.....)-)))-----......))).)).))))........ ( -25.10) >consensus CCA_______ACCC___ACGUACCACCUCUUCCUGUUUGCGACACAAAUGUGACAGGCAAAAAGUGCACGCAG_UGCGCAGGCAAAGUGGAUGAAGUGGAAAACCCG ......................((((.((.(((..(((((..(((....)))...........(((((......)))))..)))))..))).)).))))........ (-17.92 = -19.17 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:14 2006