Locus 8684

Sequence ID 3R_DroMel_CAF1
Location 23,188,331 – 23,188,430
Length 99
Max. P 0.617678
window13946

overview

Window 6

Location 23,188,331 – 23,188,430
Length 99
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 81.28
Mean single sequence MFE -29.60
Consensus MFE -19.06
Energy contribution -20.37
Covariance contribution 1.31
Combinations/Pair 1.17
Mean z-score -1.67
Structure conservation index 0.64
SVM decision value 0.17
SVM RNA-class probability 0.617678
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23188331 99 + 27905053
AGAAGGGUUCGCGGAAACCACUCGCCGUCAAUGGGGAUCACCAGGCUGACAACGGCAAGGAUCAAACCAGUACUAAAGAACGACCACCAUCCGCCAGCA
......(((.(((((........(((((((.(((......)))...))))...)))..((......)).....................))))).))). ( -23.70)
>DroSec_CAF1 3267 99 + 1
AGAAGAGUUCGCGGAAACCACUCACCGCCAAUGGGGAUCACCAGGCUGGCAACGACAAGGAUCAAACCAUUGUCAAGGAACGACCACCUUCAGCCAGCA
..........((((..........))))...(((......))).((((((...(((((((......)).)))))((((........))))..)))))). ( -29.70)
>DroSim_CAF1 3543 99 + 1
AAAAGGGUUCGCGGAAACCACUCACCGUCAAUGGGGAUCACCAGGCUGGCAACGGCAACGAUCAAACCAGUGUCAAGGAACGACCACCAUCCGCCAGCA
......(((.(((((...........(.((.(((.((((.....((((....))))...))))...))).)).)..((.....))....))))).))). ( -29.80)
>DroEre_CAF1 3528 99 + 1
AGAAGGGUUCGCGGAAGCCACUCACUGUCAAUGGGGAUCACCAGGCUGGAAACGGCCAGGAUCAAACCAGUGGCAAGGAACGACCACCAUCCGCCAGCA
......(((.(((((.((((((..........((.((((....(((((....)))))..))))...))))))))..((.....))....))))).))). ( -38.30)
>DroYak_CAF1 2882 99 + 1
AGAAGGGUUCGCGGAAACCACUCACUGUCAAUGGGGAUCACCAGGCUGGAAACGGCAAGGAUCAAACCAGUGUCAAGGAACGACCACCAUCCGCCAGCA
......(((.(((((..........((.((.(((.((((.....((((....))))...))))...))).)).)).((.....))....))))).))). ( -31.90)
>DroPer_CAF1 3335 96 + 1
UGAAGGGUUCGAGGAAGCAGAUUGAAGUCAAUGGAGAAAAUAUUGCAAG--AGAGCAAGGGUCGGG-UAGUGCCAAGGAUCGUCCCCAAUCUGCUGUCA
............(..(((((((((..................((((...--...))))(((.(((.-............))).))))))))))))..). ( -24.22)
>consensus
AGAAGGGUUCGCGGAAACCACUCACCGUCAAUGGGGAUCACCAGGCUGGCAACGGCAAGGAUCAAACCAGUGUCAAGGAACGACCACCAUCCGCCAGCA
......(((.(((((...........(.((.(((.((((.....((((....))))...))))...))).)).)..((.....))....))))).))). (-19.06 = -20.37 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:11 2006