| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 23,188,176 – 23,188,272 |
| Length | 96 |
| Max. P | 0.567355 |
| Location | 23,188,176 – 23,188,272 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 80.97 |
| Mean single sequence MFE | -33.18 |
| Consensus MFE | -20.75 |
| Energy contribution | -20.62 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.567355 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23188176 96 + 27905053 AAGUGCGGAGGACUCCUGCGAAAACUGUUGCUACCACAAGCGACAAAAGGAUCGGGUGGUUAAUCGCAAGCGUUCCACAUCCUCUAGGAAGUCAAA ..........((((((((.((....(((((((......)))))))...((((...((((.....(....)....)))))))))))))).))))... ( -27.40) >DroPse_CAF1 3045 96 + 1 GGACGACGAGGACUCCUGCGAGAACUGCUGCUACCACAAGCGGCGGAAGGAGCGGGUGGUGUCGCGAAAGCGUUCCACAUCUUCCAGAAGAUCGAA (((.((.(.((((.(((((.....((((((((......)))))))).....))))).)....(((....))).))).).)).)))........... ( -36.50) >DroEre_CAF1 3376 96 + 1 GAGUGCGGAGGACUCCUGCGAAAACUGUUGCUACCACAAGCGACAAAAGGAUCGAGUGGUCAACCGCAAGCGCUCCACGUCCUCUAGAAAGUUGAA ......(((((((............(((((((......)))))))...(((.((.((((....))))...)).)))..)))))))........... ( -30.70) >DroYak_CAF1 2730 96 + 1 GAGUGCGGAGGACUCCUGCGAGAACUGUUGCUACCACAAGCGGCAAAAGGAUCGAGUGGUUAGCCGCAAGCGUUCCACGUCCUCCAGGAAGUCAAA ..........((((((((.(((.(((((((((......)))))))...(((.((.((((....))))...)).)))..)).))))))).))))... ( -35.20) >DroMoj_CAF1 2949 96 + 1 GGAUGACGAGGACUCCUGCGAGAACUGUUGCUACCACAAGCGCCAGAAGCAGCGAGUGGUGCAGCGCAAGCGCUCCACGCCCUCGCACAGAUCCAA (((((.(((((..((((((.....(((.((((......)))).)))..)))).))((((.((.((....)))).))))..)))))))....))).. ( -38.70) >DroPer_CAF1 3177 96 + 1 GGACGACGAGGACUCUUGCGAGAACUGCUGCUACCACAAGCGGCGGAAGGAGCGGGUGGUGUCGCGAAAACGUUCCACAUCUUCCAGAAGAUCGAA ......(((...((..((.((((.((((((((......))))))))..((((((..(.(.....).)...))))))...)))).))..)).))).. ( -30.60) >consensus GAAUGACGAGGACUCCUGCGAGAACUGUUGCUACCACAAGCGGCAAAAGGAGCGAGUGGUGAAGCGCAAGCGUUCCACAUCCUCCAGAAAAUCGAA ......((((((.((((........(((((((......)))))))..))))....((((.....(....)....)))).))))))........... (-20.75 = -20.62 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:10 2006