Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 23,185,496 – 23,185,587 |
Length | 91 |
Max. P | 0.725944 |
Location | 23,185,496 – 23,185,587 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -18.60 |
Consensus MFE | -18.20 |
Energy contribution | -18.20 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.53 |
Structure conservation index | 0.98 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.725944 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 23185496 91 + 27905053 UUUGGAAAAAGUAAUUGCUUUUGCCCAAUCAGCCACUCGACACUUGCACAAAAGGCCUGGCUGACAACCAAUCGACCGACCGACCAACCAC .((((.((((((....))))))..))))(((((((...(...(((......))).).))))))).......(((......)))........ ( -19.40) >DroSec_CAF1 442 87 + 1 UUUGGAAAAAGUAAUUGCUUUUGCCCAAUCAGCCACUCGACACUUGCACAAAAGGCCUGGCUGACAACCAAUCGACCGACCAAC----CAC .((((.((((((....))))))..))))(((((((...(...(((......))).).)))))))....................----... ( -18.20) >DroEre_CAF1 713 85 + 1 UUUGGAAAAAGUAAUUGCUUUUGCCCAAUCAGCCACUCGACACUUGCACAAAAGGCCUGGCUGACAACCAAUCGACCGAGCAACC------ .((((.((((((....))))))..))))(((((((...(...(((......))).).))))))).....................------ ( -18.20) >consensus UUUGGAAAAAGUAAUUGCUUUUGCCCAAUCAGCCACUCGACACUUGCACAAAAGGCCUGGCUGACAACCAAUCGACCGACCAACC___CAC .((((.((((((....))))))..))))(((((((...(...(((......))).).)))))))........................... (-18.20 = -18.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:08 2006