Locus 8677

Sequence ID 3R_DroMel_CAF1
Location 23,183,280 – 23,183,386
Length 106
Max. P 0.816327
window13937

overview

Window 7

Location 23,183,280 – 23,183,386
Length 106
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 90.66
Mean single sequence MFE -39.62
Consensus MFE -31.20
Energy contribution -32.28
Covariance contribution 1.08
Combinations/Pair 1.08
Mean z-score -1.76
Structure conservation index 0.79
SVM decision value 0.67
SVM RNA-class probability 0.816327
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 23183280 106 + 27905053
AACAGGAACUCGAAUGGCGAUGGCAAUCGUCUGGUGUGGGCCAACUGAAAUGGCGGGCAGUUGGACU--------GUUCGACUGUUGGUCUGGCCAACUGGCAGUGCCAAAGUU
....((..(.((...((((((....))))))...)).)..))((((....((((((((((.....))--------)))).(((((..((.......))..))))))))).)))) ( -37.40)
>DroSec_CAF1 26054 106 + 1
AACAGGAACUCGAAUGGCGAUGGCAAUCGUUUCGUGUGGGCCAACUGAAAUGGCGGCCAGUUGGACU--------GUUCGACUGUUGGACUGGCCAACUGGCAGUGCCAAAGUU
....((.((.((((..(((((....))))))))).))...))((((....((((.(((((((((...--------((((((...))))))...)))))))))...)))).)))) ( -41.90)
>DroSim_CAF1 15870 106 + 1
AACAGGAACUCGAAUGGCGAUGGCAAUCGUUUCGUGUGGGCCAACUGAAAUGGCGGCCAGUUGGACU--------GUUCGACUGUUGGACUGGCCAACUGGCAGUGCCAAAGUU
....((.((.((((..(((((....))))))))).))...))((((....((((.(((((((((...--------((((((...))))))...)))))))))...)))).)))) ( -41.90)
>DroEre_CAF1 30064 105 + 1
AACAGGAACUCGAAUGGCGAUGGCAAUCGCCUCGCGUUGGCCAACUGGAAUGGCGGGCAGUAGGAC---------GUUGGACUGUUGGACUGGCUAACUGGCAGUGCCAAAGUU
(((((....((.((((((((.(((....)))))))(((.((((.......)))).))).......)---------))).)))))))((((((.(.....).)))).))...... ( -36.20)
>DroYak_CAF1 17323 114 + 1
AACAGGAACUCGAAUGGCGAUGGCAAUCGCCUCGUGUUGGCCAACUGGAAUGGCGGGCAGUUGGACUGGUGGACUGGUGGACUGUUGGACUGGGUAACUGGCAGUGCCAAAGUU
..(((.(((.(((..((((((....))))))))).)))..(((((((..........))))))).)))...((((..((((((((..(.........)..))))).))).)))) ( -40.70)
>consensus
AACAGGAACUCGAAUGGCGAUGGCAAUCGUCUCGUGUGGGCCAACUGAAAUGGCGGGCAGUUGGACU________GUUCGACUGUUGGACUGGCCAACUGGCAGUGCCAAAGUU
....((.((.(((..((((((....))))))))).))...))((((....((((.(((((((((((.........)))))))))))..((((.((....)))))))))).)))) (-31.20 = -32.28 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:02 2006